View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8516_high_18 (Length: 265)
Name: NF8516_high_18
Description: NF8516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8516_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 252
Target Start/End: Original strand, 5550208 - 5550453
Alignment:
| Q |
11 |
agcagagagggagattggatagttcaactgctttgtgctatgatataaggagttgaaggtctttgatcaaactcaaacgaaagaaaacaaattaatctaa |
110 |
Q |
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| T |
5550208 |
agcagagagggagattggatagttcaactactttgtgctatgatataaggagttgaaggtctttgatcaaactcaaacgaaagaaaacaaattaatctaa |
5550307 |
T |
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| Q |
111 |
caactaactactgatatttgctaatttttattttattttaaaaaagc----ttaagagagcaaagagtgacaagtatcaagtggaaaagatgtgtatgta |
206 |
Q |
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| T |
5550308 |
caactaactactgatatttgctaattgttattttattttaaaaaagcttaattaagagagcaaagagtgacaagtatcaagtggaaaagatgtgtatgta |
5550407 |
T |
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| Q |
207 |
ccttgcattatgatgaaggatgatttttataggttggagactgatg |
252 |
Q |
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| T |
5550408 |
ccttgcattatgatgaaggatgatttttataggtcggagactgatg |
5550453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 129
Target Start/End: Original strand, 9454481 - 9454569
Alignment:
| Q |
42 |
tttgtgctatgatataaggagttgaaggtctttga-tcaaactcaaacgaaagaaaacaaattaatctaacaactaactactgatattt |
129 |
Q |
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| T |
9454481 |
tttgagctaagatataaggagttgaaggtcctggattcaaactcagagggaagagtaaatattaatctaacaactaaatactaatattt |
9454569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 131
Target Start/End: Complemental strand, 32183268 - 32183228
Alignment:
| Q |
91 |
aagaaaacaaattaatctaacaactaactactgatatttgc |
131 |
Q |
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| T |
32183268 |
aagaaaaaaaactaatctaacaactaactactaatatttgc |
32183228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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