View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8516_high_3 (Length: 502)
Name: NF8516_high_3
Description: NF8516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8516_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 23 - 490
Target Start/End: Complemental strand, 20550510 - 20550059
Alignment:
| Q |
23 |
catctgctataaccaggggaatttttaatatgtctcaagactatgcttctccctttgatggcgatggccatggcacgtgagtttttggcatttcaaaatc |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
20550510 |
catctgctataaccaggggaatttttaatatgtctcaagactatgcttctccctttgatggcgatggccatggcacgtgagtttttgtcatttcaaaatc |
20550411 |
T |
|
| Q |
123 |
agtgttatgttttactctagtttatcatgattacttaatcggtttattctatcaaattccattcatcttctaatatcgttttgaagttttctctcttcta |
222 |
Q |
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||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20550410 |
agtgttatgttttactctaatttatcatgattacttaactggtttattctatcaaattccattcatcttctaatatcgttttgaagttttctctcttcta |
20550311 |
T |
|
| Q |
223 |
cttcaacatcagtgtgttatgtctagtttctatttgttgtagctttgagctctttaaggggttttcttcagttccttggacctttaacaannnnnnnggn |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
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| T |
20550310 |
cttcaacatcagtgtgttatgtctagtttctatttgttgtagctttgagctctttaagg--------------ccttggacctttaacaatttttttgg- |
20550226 |
T |
|
| Q |
323 |
nnnnnntaataatatttgagagttgttctggaattgcaatgcctcagattatcttaggcatcatttgaaaatgaaactgttgtcaaactttacgtttatt |
422 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
20550225 |
aaaaaataataatatttgagagttgttctggaattgcgatgcctcagattatcttaggcatcatttgaaaatgaaactattgtcaaactttacgtttatt |
20550126 |
T |
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| Q |
423 |
tgattcacactaacaaacttagatttgttgaattttcatctcctttaactgaatgtccattttgatgt |
490 |
Q |
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| T |
20550125 |
tgattcacaccaacaaacttagatttgttgaa-tttcttctcctttaactgaatgttcattttgatgt |
20550059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 37075334 - 37075296
Alignment:
| Q |
66 |
tgcttctccctttgatggcgatggccatggcacgtgagt |
104 |
Q |
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|||||||||||||||||| ||||| |||||||||||||| |
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| T |
37075334 |
tgcttctccctttgatggtgatggacatggcacgtgagt |
37075296 |
T |
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