View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8516_high_5 (Length: 444)
Name: NF8516_high_5
Description: NF8516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8516_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 26 - 428
Target Start/End: Complemental strand, 55025284 - 55024882
Alignment:
| Q |
26 |
gatgttttgcattatacaaatccactgcatcaacaaaagcatgatattaagaaacgatgattgaacattattccttgatcaaagtctaatctacaactga |
125 |
Q |
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| T |
55025284 |
gatgttttgcattatacaaatccactgcatcaacaaaagcatgatattaagaaacgatgattgaacattattccttgatcaaagtctaatctacaactga |
55025185 |
T |
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| Q |
126 |
gtagaatgatatcagaatggggtttaacttcgctcgatgagaaaatgtacttttctggttctctgaggctctttagaggaaatttagcttgaagagggta |
225 |
Q |
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| T |
55025184 |
gtagaatgatatcagaatggggtttaacttcgctcgatgagaaaatgtacttttctggttctctgaggctctttagaggaaatttagcttgaagagggta |
55025085 |
T |
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| Q |
226 |
aacagaaaaggttaaaacgggtattttgtacacaaattctctcatatattaacaaaaagaaaacattttttcttcaaagtacagaaccatttctactcta |
325 |
Q |
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| T |
55025084 |
aacagaaaaggttaaaacgggtattttgtacacaaattctctcatatattaacaaaaagaaaacattttttcttcaaagtacagaaccatttctactcta |
55024985 |
T |
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| Q |
326 |
aaatctcgaatgaagttgacaatacaatgaggttcttttattaattttatatttgtgattttcaatttaacaaatataaactaaagaacctaccaaaatg |
425 |
Q |
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| T |
55024984 |
aaatctcgaatgaagttgacaatacaacgaggttcttttattaattttatatttgtgattttcaatttaacaaatataaactaaagaacctaccaaaatg |
55024885 |
T |
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| Q |
426 |
atg |
428 |
Q |
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| T |
55024884 |
atg |
55024882 |
T |
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