View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8516_low_11 (Length: 378)
Name: NF8516_low_11
Description: NF8516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8516_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 369
Target Start/End: Complemental strand, 42732724 - 42732373
Alignment:
| Q |
18 |
ataatcaaccttcacaagtcactttctctctcgttgtggaaggcttgttgttgtatatactatatacaactatgttccataaatattgattatttattga |
117 |
Q |
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| T |
42732724 |
ataatcaaccttcacaagtcactttctctctcgttgtggaaggcttgttgttgtatatactatatacaactatgttccataaatattgattatttattga |
42732625 |
T |
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| Q |
118 |
tgtcatgtagtaatcagaccataataacgcatgcaatgcaacaatataagcattccctatagagaaggacaatgagtcagagcttatagtaataggttat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42732624 |
tgtcatgtagtaatcagaccataataacgcatgcaatgcaataatataagcattccctatagagaaggacaatgagtcagagcttatagtaatagattat |
42732525 |
T |
|
| Q |
218 |
acaagtgacaacgaagaggctctttctcaggagtaattggggcctaatggactgttctattgggtctcagcccttaatgtatagtgttggtacgtctaga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42732524 |
acaagtgacaacgaagaggctctttctcaggagtaattggggcctaatggactgttctattgggtctcagcccttaatgtatagtgttggtacgtctaga |
42732425 |
T |
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| Q |
318 |
tcaattcaacagtgacacgtgcagtttacttaattccattaccattctctgc |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
42732424 |
tcaattcaacagtgacacgtgcagtttacttaattccatcaccattctctgc |
42732373 |
T |
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