View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8516_low_12 (Length: 370)
Name: NF8516_low_12
Description: NF8516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8516_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 10211288 - 10211623
Alignment:
| Q |
1 |
atgaagtgtacaaagggtacgccaacccttacaaaatattacaaataaaccaacacaaaacaacaatactcaaatactttgcatccaacctaatggattg |
100 |
Q |
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| T |
10211288 |
atgaagtgtacaaagggtacgccaacccttacaaaatattacaaataaaccaacacaaaacagcaatactcaaatactttgcatccaacctaatggattg |
10211387 |
T |
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| Q |
101 |
ttccaccaataagaaaagcataattattattcttccctcttctacctctaaaccaaaaccaagatacatttttgatatataacacaatcttgagaaacaa |
200 |
Q |
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| T |
10211388 |
ttccaccaataagaaaagcataattattattcttccctcttctacctctaaaccaaaaccaagatacatttttgatatataacacaatcttgagaaacaa |
10211487 |
T |
|
| Q |
201 |
ctggccattataagatttaatattgtaaatcgaatcttaacttgcttaaaatcaattagcaaggagacaaacattctataaacctagcaaatgcatactt |
300 |
Q |
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| T |
10211488 |
ctggccattataagatttaatattgtaaatcgaatcttaacttgcttaaaatcaataagcaaggagacaaacattctataaacctagcaaatgcatactt |
10211587 |
T |
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| Q |
301 |
tgttcgtaatatctcctagaatttcctcaaacacca |
336 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
10211588 |
tgttcgtaatatctcctagaatttcctcaaacacca |
10211623 |
T |
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