View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8516_low_13 (Length: 369)
Name: NF8516_low_13
Description: NF8516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8516_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 65 - 348
Target Start/End: Original strand, 2099244 - 2099526
Alignment:
| Q |
65 |
taaaatagaagagaccaatgtagaaagagacaatcaatcaaggaccaatgaccaaacaacacaaagcaagataaactatcgactaaattgtacccacaaa |
164 |
Q |
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| T |
2099244 |
taaaatagaagagaccaatgtagaaagacacaatcaatcaaggaccaatgaccaaacaatgcaaagcaagataaactatcgactaaattgtacccacaaa |
2099343 |
T |
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| Q |
165 |
atagtaccaaatagacaaacccaattgcaaaggaaagtcgnnnnnnnnnctctttcttttcacaaagtctacgaaccaaatacgtaattcttagaaccaa |
264 |
Q |
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| T |
2099344 |
atagtaccaaatagacaaacccaattgcaaaggaaagtcgttttttttt-tatttcttttcacacagtctacgaaccaaatacgtaattcttagaaccaa |
2099442 |
T |
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| Q |
265 |
atgtcaaatagcttaaccaaaagcaaacaatagaatagtggtttctccaacatccaaaaagaacaaaataaataaacaaagcaa |
348 |
Q |
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| T |
2099443 |
atgtcaaatagcttaaccaaatgcaaacaatagaatagtggtttctccaacatccaaaaagaacaaaataaataaacaaagcaa |
2099526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 2098918 - 2098967
Alignment:
| Q |
17 |
agagggagagagacaatcaatcaaaagaattaattgacggataaccaata |
66 |
Q |
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| T |
2098918 |
agagggagagagacaatcaatcaaaagaattaattgagagataaccaata |
2098967 |
T |
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