View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8516_low_16 (Length: 337)

Name: NF8516_low_16
Description: NF8516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8516_low_16
NF8516_low_16
[»] chr3 (8 HSPs)
chr3 (65-313)||(39053949-39054209)
chr3 (84-238)||(31708178-31708333)
chr3 (79-260)||(31013004-31013186)
chr3 (9-63)||(39054392-39054446)
chr3 (103-163)||(31492777-31492836)
chr3 (179-267)||(35264321-35264409)
chr3 (104-145)||(41298463-41298504)
chr3 (103-167)||(41208259-41208323)
[»] chr6 (6 HSPs)
chr6 (106-260)||(46205-46362)
chr6 (100-150)||(29338623-29338673)
chr6 (100-160)||(4910915-4910975)
chr6 (180-238)||(3289832-3289890)
chr6 (100-160)||(6654108-6654168)
chr6 (100-148)||(10669493-10669541)
[»] chr7 (5 HSPs)
chr7 (179-260)||(40491665-40491746)
chr7 (100-163)||(41386830-41386893)
chr7 (114-167)||(32683582-32683635)
chr7 (114-163)||(35772279-35772328)
chr7 (179-235)||(45557452-45557508)
[»] chr4 (5 HSPs)
chr4 (86-163)||(52965869-52965945)
chr4 (100-163)||(44278982-44279045)
chr4 (100-142)||(9134617-9134659)
chr4 (108-146)||(49142869-49142907)
chr4 (104-160)||(5923916-5923971)
[»] chr5 (3 HSPs)
chr5 (79-163)||(15368359-15368443)
chr5 (79-160)||(2937600-2937681)
chr5 (190-259)||(35108337-35108406)
[»] chr2 (5 HSPs)
chr2 (97-163)||(17281413-17281479)
chr2 (100-163)||(5533046-5533109)
chr2 (100-148)||(43501132-43501180)
chr2 (97-160)||(33019174-33019237)
chr2 (122-163)||(31415364-31415405)
[»] chr8 (4 HSPs)
chr8 (179-260)||(9461456-9461536)
chr8 (100-267)||(32927899-32928067)
chr8 (179-260)||(10368052-10368133)
chr8 (179-251)||(5219206-5219278)
[»] chr1 (5 HSPs)
chr1 (100-160)||(30850417-30850477)
chr1 (124-163)||(2555932-2555971)
chr1 (180-267)||(7524201-7524288)
chr1 (65-148)||(34915038-34915121)
chr1 (100-148)||(28287366-28287414)


Alignment Details
Target: chr3 (Bit Score: 94; Significance: 7e-46; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 65 - 313
Target Start/End: Complemental strand, 39054209 - 39053949
Alignment:
Q  65 tttgaaaaatcatatttg-gggactaaaacgagttatacttgaagctactatttgtagcttttaattttagaattgattctaacatataaatttataatt 163  Q
    ||||||||| |||||||| |||| ||||| ||||||||| |||||||||||||| || ||||||||| ||||||||||| ||||||||||||||||||||    
T  39054209 tttgaaaaaacatatttgtgggattaaaatgagttatacctgaagctactatttataacttttaattctagaattgattttaacatataaatttataatt 39054110  T
Q  164 taac----nnnnnnnacacgaatgtatccgaac----acaaatcactttac----ttgcagctcatttttagtccaaatcaattttaatgaatcaattca 251  Q
    ||||           | | ||||||||||||||    | ||||||||||||    ||||| |||||||||| || ||| |||||||||||||||||||||    
T  39054109 taactttttttttttatatgaatgtatccgaacatatataaatcactttacttatttgcaactcatttttaatctaaaccaattttaatgaatcaattca 39054010  T
Q  252 ctcaaaatcgattattttcaaaagcaaaacctaagttgtttataatggcttaggcctaagtg 313  Q
    ||||||||| ||| || | |||| ||||| ||||||||||||||||||||||||||||||||    
T  39054009 ctcaaaatcaattcttgt-aaaaacaaaatctaagttgtttataatggcttaggcctaagtg 39053949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 84 - 238
Target Start/End: Complemental strand, 31708333 - 31708178
Alignment:
Q  84 ggactaaaacgagttatacttgaagctactatttgtagcttttaattttagaattgattctaacatataaatttataatttaac-nnnnnnnacacgaat 182  Q
    |||||||||  | ||||||| |||||||||||||||||||||| ||| ||||||||||||||||| | |||||||||||| |||        ||| ||||    
T  31708333 ggactaaaagcaattatactcgaagctactatttgtagcttttgattctagaattgattctaacacacaaatttataattcaactcacttttacatgaat 31708234  T
Q  183 gtatccgaacacaaatcactttacttgcagctcatttttagtccaaatcaatttta 238  Q
    |||||| |||||||| |||||||   ||| |||| ||||||||| |||||||||||    
T  31708233 gtatccaaacacaaaccactttatcagcaactcacttttagtcctaatcaatttta 31708178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 79 - 260
Target Start/End: Original strand, 31013004 - 31013186
Alignment:
Q  79 tttggggactaaaacgagttatacttgaagctactatttgtagcttttaattttagaattgattctaacatataaatttataatttaacnnnnnnn-aca 177  Q
    ||||||||||||||  | || |||||||| |||||||||||||| ||| | | ||||||||||||||||| | ||||||| |||| |||        |||    
T  31013004 tttggggactaaaagcaattctacttgaacctactatttgtagcctttgaatctagaattgattctaacacacaaatttagaattcaactcacttgtaca 31013103  T
Q  178 cgaatgtatccgaacacaaatcactttacttgcagctcatttttagtccaaatcaattttaatgaatcaattcactcaaaatc 260  Q
     ||||| |||| ||||||||||||||||  | || |||| ||||||||  |||||||||||  ||||||||||||||||||||    
T  31013104 tgaatgcatccaaacacaaatcactttatctacaactcacttttagtcggaatcaattttatggaatcaattcactcaaaatc 31013186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 39054446 - 39054392
Alignment:
Q  9 tggtgttgaataatgtaaaagttggcaatattagatgggcttattttcataaact 63  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  39054446 tggtgttgaatgacgtaaaagttggcaatattagatgggcttattttcataaact 39054392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 163
Target Start/End: Original strand, 31492777 - 31492836
Alignment:
Q  103 ttgaagctactatttgtagcttttaattttagaattgattctaacatataaatttataatt 163  Q
    ||||||| |||||||||||||||| ||| ||||||||||| ||||| | ||||||||||||    
T  31492777 ttgaagcaactatttgtagcttttgattctagaattgatt-taacacacaaatttataatt 31492836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 267
Target Start/End: Complemental strand, 35264409 - 35264321
Alignment:
Q  179 gaatgtatccgaacacaaatcactttacttgcagctcatttttagtccaaatcaattttaatgaatcaattcactcaaaatcgattatt 267  Q
    ||||||| || |||| || ||||||||||| || |||| |||| ||   |||||||||||  |||||||||||||||||||| ||||||    
T  35264409 gaatgtacccaaacataactcactttactttcaactcacttttggttacaatcaattttacagaatcaattcactcaaaatcaattatt 35264321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 145
Target Start/End: Original strand, 41298463 - 41298504
Alignment:
Q  104 tgaagctactatttgtagcttttaattttagaattgattcta 145  Q
    |||||||||||||||||| |||| ||| ||||||||||||||    
T  41298463 tgaagctactatttgtagttttttattctagaattgattcta 41298504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 167
Target Start/End: Complemental strand, 41208323 - 41208259
Alignment:
Q  103 ttgaagctactatttgtagcttttaattttagaattgattctaacatataaatttataatttaac 167  Q
    |||||| ||||| ||||||||||| |||||| |||||| | ||||| | |||||| |||||||||    
T  41208323 ttgaagatactacttgtagcttttcattttaaaattgactttaacacacaaatttttaatttaac 41208259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 106 - 260
Target Start/End: Complemental strand, 46362 - 46205
Alignment:
Q  106 aagctactatttgtagcttttaattttagaattgattctaacatataaattt--ataatttaacnnnnnnnac-acgaatgtatccgaacacaaatcact 202  Q
    |||| |||||||||||||||| ||| |||||| |||||||||| | ||||||  |||||| |||        | |||||||||||| ||||||||| |||    
T  46362 aagcaactatttgtagcttttgattctagaatagattctaacaaacaaatttttataattcaactcacttttccacgaatgtatccaaacacaaataact 46263  T
Q  203 ttacttgcagctcatttttagtccaaatcaattttaatgaatcaattcactcaaaatc 260  Q
    ||| ||||| |||| |||||||   |||||||||||  ||||||||||||||||||||    
T  46262 ttaattgcaactcacttttagttagaatcaattttacagaatcaattcactcaaaatc 46205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 29338673 - 29338623
Alignment:
Q  100 tacttgaagctactatttgtagcttttaattttagaattgattctaacata 150  Q
    ||||||||||| ||||||||| ||| | |||||||||||||||||||||||    
T  29338673 tacttgaagcttctatttgtaacttatgattttagaattgattctaacata 29338623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 4910915 - 4910975
Alignment:
Q  100 tacttgaagctactatttgtagcttttaattttagaattgattctaacatataaatttata 160  Q
    ||||||||||||  ||||||||||||| ||| ||||||||||| | ||||| |||||||||    
T  4910915 tacttgaagctatgatttgtagcttttgattctagaattgattttcacatacaaatttata 4910975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 238
Target Start/End: Original strand, 3289832 - 3289890
Alignment:
Q  180 aatgtatccgaacacaaatcactttacttgcagctcatttttagtccaaatcaatttta 238  Q
    ||||||||| ||||||||||||||||  |||| |||| ||| |||| ||||||||||||    
T  3289832 aatgtatccaaacacaaatcactttatctgcaactcactttaagtcgaaatcaatttta 3289890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 6654168 - 6654108
Alignment:
Q  100 tacttgaagctactatttgtagcttttaattttagaattgattctaacatataaatttata 160  Q
    ||||||||||||  ||||||||||||||||| |||| |||||| | ||| | |||||||||    
T  6654168 tacttgaagctaggatttgtagcttttaattctagatttgattttcacacagaaatttata 6654108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 10669541 - 10669493
Alignment:
Q  100 tacttgaagctactatttgtagcttttaattttagaattgattctaaca 148  Q
    ||||||||| |||||||||||| |||| ||| | |||||||||||||||    
T  10669541 tacttgaaggtactatttgtagttttttattctggaattgattctaaca 10669493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 179 - 260
Target Start/End: Original strand, 40491665 - 40491746
Alignment:
Q  179 gaatgtatccgaacacaaatcactttacttgcagctcatttttagtccaaatcaattttaatgaatcaattcactcaaaatc 260  Q
    |||||||||| || | |||||||||||| | || |||| |||||||| ||||||||||||  ||||||||||||||||||||    
T  40491665 gaatgtatccaaaaataaatcactttaccttcaactcacttttagtcaaaatcaattttacagaatcaattcactcaaaatc 40491746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 100 - 163
Target Start/End: Complemental strand, 41386893 - 41386830
Alignment:
Q  100 tacttgaagctactatttgtagcttttaattttagaattgattctaacatataaatttataatt 163  Q
    ||||||||||||  ||||||||||||||||| ||||||||||  | ||| | ||||||||||||    
T  41386893 tacttgaagctaggatttgtagcttttaattctagaattgatatttacacacaaatttataatt 41386830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 167
Target Start/End: Original strand, 32683582 - 32683635
Alignment:
Q  114 atttgtagcttttaattttagaattgattctaacatataaatttataatttaac 167  Q
    ||||||||||||| || |||||||||||| |  || ||||||||||||||||||    
T  32683582 atttgtagcttttgatattagaattgattttcccacataaatttataatttaac 32683635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 163
Target Start/End: Original strand, 35772279 - 35772328
Alignment:
Q  114 atttgtagcttttaattttagaattgattctaacatataaatttataatt 163  Q
    |||||||| |||| ||||||||||||||| | ||| ||||||||||||||    
T  35772279 atttgtagtttttgattttagaattgattttcacaaataaatttataatt 35772328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 45557452 - 45557508
Alignment:
Q  179 gaatgtatccgaacacaaatcactttacttgcagctcatttttagtccaaatcaatt 235  Q
    |||||||||| ||||||||||||||||| | || |||| ||||||||  ||||||||    
T  45557452 gaatgtatccaaacacaaatcactttaccttcaactcacttttagtcagaatcaatt 45557508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 86 - 163
Target Start/End: Complemental strand, 52965945 - 52965869
Alignment:
Q  86 actaaaacgagttatacttgaagctactatttgtagcttttaattttagaattgattctaacatataaatttataatt 163  Q
    |||||||||| || ||||||||| |||||||| |||||||| ||| || |||||||||||||| ||||||||||||||    
T  52965945 actaaaacga-ttctacttgaagttactatttatagcttttgattctaaaattgattctaacacataaatttataatt 52965869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 163
Target Start/End: Complemental strand, 44279045 - 44278982
Alignment:
Q  100 tacttgaagctactatttgtagcttttaattttagaattgattctaacatataaatttataatt 163  Q
    |||||||| ||||||| |||| ||||| |||||| |||||||||||||| |||||||| |||||    
T  44279045 tacttgaaactactatatgtatctttttattttaaaattgattctaacacataaatttttaatt 44278982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 142
Target Start/End: Original strand, 9134617 - 9134659
Alignment:
Q  100 tacttgaagctactatttgtagcttttaattttagaattgatt 142  Q
    ||||||||||||  ||||||||||||| |||||||||||||||    
T  9134617 tacttgaagctaaaatttgtagcttttgattttagaattgatt 9134659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 146
Target Start/End: Original strand, 49142869 - 49142907
Alignment:
Q  108 gctactatttgtagcttttaattttagaattgattctaa 146  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  49142869 gctactatttgtagtttttaattttataattgattctaa 49142907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 5923971 - 5923916
Alignment:
Q  104 tgaagctactatttgtagcttttaattttagaattgattctaacatataaatttata 160  Q
    ||||| |||||||| || |||||||||||| |||||||| ||||||| |||||||||    
T  5923971 tgaagttactattt-taccttttaattttaaaattgattataacatacaaatttata 5923916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 79 - 163
Target Start/End: Original strand, 15368359 - 15368443
Alignment:
Q  79 tttggggactaaaacgagttatacttgaagctactatttgtagcttttaattttagaattgattctaacatataaatttataatt 163  Q
    |||||| |||||||  | || ||||||||||||||| ||||| ||||| ||| ||||||||||||||||| | ||||||||||||    
T  15368359 tttgggaactaaaagcaattctacttgaagctactagttgtaacttttgattatagaattgattctaacacacaaatttataatt 15368443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 160
Target Start/End: Complemental strand, 2937681 - 2937600
Alignment:
Q  79 tttggggactaaaacgagttatacttgaagctactatttgtagcttttaattttagaattgattctaacatataaatttata 160  Q
    |||||| |||||||  | || ||||| ||||||||||||||||| ||| ||| ||||||||||| ||||| | |||||||||    
T  2937681 tttgggaactaaaagaaattctacttaaagctactatttgtagcctttgattctagaattgattataacacacaaatttata 2937600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 259
Target Start/End: Original strand, 35108337 - 35108406
Alignment:
Q  190 aacacaaatcactttacttgcagctcatttttagtccaaatcaattttaatgaatcaattcactcaaaat 259  Q
    |||||||||||||||| || || || ||||||| |  ||||||||||||  |||| ||||||||||||||    
T  35108337 aacacaaatcactttattttcaactaatttttatttaaaatcaattttacagaattaattcactcaaaat 35108406  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 97 - 163
Target Start/End: Original strand, 17281413 - 17281479
Alignment:
Q  97 ttatacttgaagctactatttgtagcttttaattttagaattgattctaacatataaatttataatt 163  Q
    ||||||||||||||||||| ||||||||| ||||||| |||||||| ||| | | ||||||||||||    
T  17281413 ttatacttgaagctactatctgtagctttcaattttaaaattgattttaatacacaaatttataatt 17281479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 163
Target Start/End: Complemental strand, 5533109 - 5533046
Alignment:
Q  100 tacttgaagctactatttgtagcttttaattttagaattgattctaacatataaatttataatt 163  Q
    ||||||||||||||||||||||||||| ||| |  ||||||||  |||| ||||||||||||||    
T  5533109 tacttgaagctactatttgtagcttttgattcttaaattgatttaaacacataaatttataatt 5533046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 43501132 - 43501180
Alignment:
Q  100 tacttgaagctactatttgtagcttttaattttagaattgattctaaca 148  Q
    |||||||| |||  ||||||||||||| |||||||||||||||||||||    
T  43501132 tacttgaaactaggatttgtagcttttgattttagaattgattctaaca 43501180  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 97 - 160
Target Start/End: Complemental strand, 33019237 - 33019174
Alignment:
Q  97 ttatacttgaagctactatttgtagcttttaattttagaattgattctaacatataaatttata 160  Q
    ||||| |||||||||  |||||||||||||  |||||||||||||| | ||| |||||||||||    
T  33019237 ttatatttgaagctagaatttgtagcttttggttttagaattgattttcacacataaatttata 33019174  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 163
Target Start/End: Original strand, 31415364 - 31415405
Alignment:
Q  122 cttttaattttagaattgattctaacatataaatttataatt 163  Q
    ||||||||||||||||||||||| ||| | ||||||||||||    
T  31415364 cttttaattttagaattgattcttacacacaaatttataatt 31415405  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 260
Target Start/End: Complemental strand, 9461536 - 9461456
Alignment:
Q  179 gaatgtatccgaacacaaatcactttacttgcagctcatttttagtccaaatcaattttaatgaatcaattcactcaaaatc 260  Q
    |||||||||| |||||||||||||||| |||||  ||| ||||||||  ||||||||||||  |||||||| ||||||||||    
T  9461536 gaatgtatccaaacacaaatcactttagttgcaattca-ttttagtcagaatcaattttaaataatcaattaactcaaaatc 9461456  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 267
Target Start/End: Original strand, 32927899 - 32928067
Alignment:
Q  100 tacttgaagctactatttgtagcttttaattttagaattgattctaacatataaatttataatttaacnnnnnnn-acacgaatgtatccgaacacaaat 198  Q
    ||||||||||||  ||||||||||||| ||| ||||||| ||| | ||| | ||||||||| || |||        ||| |||||||||| |||||||||    
T  32927899 tacttgaagctaggatttgtagcttttgattatagaattcatttttacacacaaatttatagttcaactcacttttacatgaatgtatccaaacacaaat 32927998  T
Q  199 cactttacttgcagctcatttttagtccaaatcaattttaatgaatcaattcactcaaaatcgattatt 267  Q
    |||||| | | || |||| |||||||   |||||||||||   ||||||||| ||||||||| ||||||    
T  32927999 cactttgccttcaactcaattttagtaagaatcaattttacataatcaattccctcaaaatcaattatt 32928067  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 260
Target Start/End: Original strand, 10368052 - 10368133
Alignment:
Q  179 gaatgtatccgaacacaaatcactttacttgcagctcatttttagtccaaatcaattttaatgaatcaattcactcaaaatc 260  Q
    |||||||||  ||||||||||||||||| | || |||| ||||| || ||||||||||||   || ||||||||||||||||    
T  10368052 gaatgtatctaaacacaaatcactttaccttcaactcacttttactcaaaatcaattttacaaaaacaattcactcaaaatc 10368133  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 251
Target Start/End: Original strand, 5219206 - 5219278
Alignment:
Q  179 gaatgtatccgaacacaaatcactttacttgcagctcatttttagtccaaatcaattttaatgaatcaattca 251  Q
    |||||||||  || ||||||||||||| ||| | || |||||||||| ||||||||||||   ||||||||||    
T  5219206 gaatgtatcaaaaaacaaatcactttatttgtaacttatttttagtcaaaatcaattttacataatcaattca 5219278  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 30850477 - 30850417
Alignment:
Q  100 tacttgaagctactatttgtagcttttaattttagaattgattctaacatataaatttata 160  Q
    |||||||| |||  |||||||| |||||||||||||||||||| ||||||| |||||||||    
T  30850477 tacttgaaactaggatttgtagtttttaattttagaattgattttaacatacaaatttata 30850417  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 124 - 163
Target Start/End: Original strand, 2555932 - 2555971
Alignment:
Q  124 tttaattttagaattgattctaacatataaatttataatt 163  Q
    |||||| |||||||||||||||||||| ||||||||||||    
T  2555932 tttaatattagaattgattctaacatacaaatttataatt 2555971  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 267
Target Start/End: Original strand, 7524201 - 7524288
Alignment:
Q  180 aatgtatccgaacacaaatcactttacttgcagctcatttttagtccaaatcaattttaatgaatcaattcactcaaaatcgattatt 267  Q
    ||||| ||| ||||||||||||||||| |  |||||| |||||||   |||||||||||  |||||| ||||| ||||||| ||||||    
T  7524201 aatgtgtccaaacacaaatcactttaccttgagctcacttttagttagaatcaattttatagaatcagttcacccaaaatcaattatt 7524288  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 65 - 148
Target Start/End: Original strand, 34915038 - 34915121
Alignment:
Q  65 tttgaaaaatcatatttggggactaaaacgagttatacttgaagctactatttgtagcttttaattttagaattgattctaaca 148  Q
    ||||| ||||||  |||| |||||||||  | || || ||||||||| | |||||||||||| ||| |||||||||||||||||    
T  34915038 tttgagaaatcaattttgaggactaaaagaaattctagttgaagctattctttgtagcttttgattctagaattgattctaaca 34915121  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 28287414 - 28287366
Alignment:
Q  100 tacttgaagctactatttgtagcttttaattttagaattgattctaaca 148  Q
    |||||||||| |  ||||||||||||| ||||||||||||||| |||||    
T  28287414 tacttgaagcaaggatttgtagcttttgattttagaattgattttaaca 28287366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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