View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8516_low_17 (Length: 336)

Name: NF8516_low_17
Description: NF8516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8516_low_17
NF8516_low_17
[»] chr2 (1 HSPs)
chr2 (19-313)||(25968727-25969021)


Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 19 - 313
Target Start/End: Original strand, 25968727 - 25969021
Alignment:
Q  19 gtctccacgatcacctcagttgatggatatagtgtcggagttgttagaatcatcggcgtcatcgcacaaggtgagactagggaagctatcccgccagact 118  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  25968727 gtctccacgatcacctcagttgtaggatatagtgtcggagttgttagaatcgtcggcgtcatcgcacaaggtgagaccagggaagctatcccgccagact 25968826  T
Q  119 tcttcgcacggattatgaacgatgtcgtgttgtggggcgtaaacggggcagagatacttttggtgtcggtaaacctcctcttagagtaattaaactggcg 218  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  25968827 tcttcgcacggattatgaacgatgtcgtgttgtggggtgtaaacggggcagagatacttttggtgtcggtaaacctcctcttagagtagttaaactggcg 25968926  T
Q  219 aaaatttcttgtgaatcggttgatcttcaatgaatctttccgattttcaaatgtgtctgcattgttgttgcgtctcttgggtatgtctctgctcc 313  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  25968927 aaaatttcttgtgaatcggttggtcttcaatgaatctttccgattttcaaatgtatctgcattgttgttgcgtctcttgggtatgtttctgctcc 25969021  T

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