View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8516_low_18 (Length: 330)
Name: NF8516_low_18
Description: NF8516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8516_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 27 - 310
Target Start/End: Complemental strand, 44370835 - 44370552
Alignment:
| Q |
27 |
agaccgcgccaattcatgaaccatcttacacaacggcacattattcaaaccaccacaagctttaatcacataaggaaatgtatacttatcaggtgcaaca |
126 |
Q |
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| T |
44370835 |
agaccgggccaattcatgaaccatcttacacaacggcacattattcaaaccaccacaagctttaatcacataaggaaatgtatacttatcaggtgcaaca |
44370736 |
T |
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| Q |
127 |
ttactacccaacatcctaaagaaaaacatcaatgcaaaatcaaaacaacccaacatagaaaaacctcttattaaccaattccaaggaagactataacata |
226 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44370735 |
ttactacccaacatcctaaagaaaaacatcaatgcaaaatcaaaacaacccaacatagaaaaacctcttattaaccaattccaaggaagactataacata |
44370636 |
T |
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| Q |
227 |
attgaagcctgcaaaacaagttaccaacatccttgaagcttctacaaagaacatacagacccaacattcttgaacccaaagtaa |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
44370635 |
attgaagcctgcaaaacaagttaccaacatccttgaagcttctacaaagaacatacatacccaacattcttgaacccaaagtaa |
44370552 |
T |
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