View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8516_low_19 (Length: 327)
Name: NF8516_low_19
Description: NF8516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8516_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 4 - 308
Target Start/End: Original strand, 25097513 - 25097818
Alignment:
| Q |
4 |
aaggtctgaatataagtttataagtgtggagcaatcatcatcttgctaattgattttgtaaatgttgagttatagatctaactcaaatattaagatgtta |
103 |
Q |
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| T |
25097513 |
aaggtctgaacataagtttataagggtggagcaatcatcatcttactaattgattttgtaaatgttgagttatagatctaactcaaattttaagatgtta |
25097612 |
T |
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| Q |
104 |
gtcgttgagttttttgctattagaccaccactaccaagtcattcatgttgtgcattaaatatttagtcttaagcgcgagtgagtgtcaataatttcacct |
203 |
Q |
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||||||||||| ||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
25097613 |
gtcgttgagttatttgctattagaccaccactatcgggtcattcatgttgtgcattagatatttagtcttaagcgcgagtgagtgtcaatagtttcacct |
25097712 |
T |
|
| Q |
204 |
ta-aataagataagattttaatataagttataagtggataaaagtcttcacttttgaaggcggtttcacaaggattcgattagagtttagattcaactca |
302 |
Q |
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|| || ||||||||||| |||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
25097713 |
tagtatgagataagatttaaatataagctataagtcgataaaagtcttcacttttgaaggcgatttcacaaggattcgattagagtttagattcaactca |
25097812 |
T |
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| Q |
303 |
aattct |
308 |
Q |
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|||||| |
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| T |
25097813 |
aattct |
25097818 |
T |
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