View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8516_low_2 (Length: 627)
Name: NF8516_low_2
Description: NF8516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8516_low_2 |
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| [»] scaffold0148 (2 HSPs) |
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Alignment Details
Target: scaffold0148 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: scaffold0148
Description:
Target: scaffold0148; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 155 - 606
Target Start/End: Complemental strand, 26616 - 26165
Alignment:
| Q |
155 |
gattatgcttatacaattatttaacgagtttagataaggatagcgtacgaagaaatattagagggcgattttacgacagtgaaagacatgtgaaggattt |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26616 |
gattatgcttatacaattatttaacgagtttagataaggatagcgtacgaagaaatatcagagggcgattttacgacagtgaaagacatgtgaaggattt |
26517 |
T |
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| Q |
255 |
gatagacatggagggattggaagagaatgacaatgaaggaatagaggttccgtatttcgatttcgagagcatactagtggccacagatgacttttctgat |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||| |
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| T |
26516 |
gatagacatggagggattggaagagaatgacaatgaaggaatagaggttccgtatttcgatttcgagagcatactaatggcgacagatgacttttccgat |
26417 |
T |
|
| Q |
355 |
gcaaacaaacttggaaaaggtggttttgggccagtttacaaggtgattgatttttccttctacctatcttcctggtcagactagattttaaattaagtaa |
454 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26416 |
gcaaataaacttggaaaaggtggttttgggccagtttacaaggtgattgatttttccttctacctatcttcctggtcagactagattttaaattaagtaa |
26317 |
T |
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| Q |
455 |
tgacctgttgagattatattttagggtaagcttggtggtcaagaaattgcagtaaagagactttcaaatgtttcatcacaaggcttacaggaatttaaga |
554 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26316 |
tgacctattgagattatattttagggtaagcttggtggtcaagaaattgcagtaaagagactttcaaatgtttcatcacaaggcttacaggaatttaaga |
26217 |
T |
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| Q |
555 |
atgaggttgttttgattgctaaacttcaacatcgaaaccttgttaaattacg |
606 |
Q |
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| T |
26216 |
atgaggttgttttgattgctaaacttcaacatcgaaaccttgttaaattacg |
26165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0148; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 2 - 89
Target Start/End: Complemental strand, 26768 - 26681
Alignment:
| Q |
2 |
cttttcggcgtagttgctctagtaggcatcattatttttgcttatgcatgcagaggaagaatagcgcatatgattaagcaaggtggga |
89 |
Q |
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| T |
26768 |
cttttcggcgtagttgctctagttggcatcattatttttgcttatgcatgcagaggaagaatagtgcatatgattaagcaaggtggga |
26681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 154; Significance: 2e-81; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 155 - 570
Target Start/End: Complemental strand, 21925743 - 21925330
Alignment:
| Q |
155 |
gattatgcttatacaattatttaacgagtttagataaggatagcgtacgaagaaatattagagggcgattttacgacagtgaaagacatgtgaaggattt |
254 |
Q |
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| T |
21925743 |
gattaagcttatataattatttaataagtatagataaagaaaacgtacaaagaaatattagagggcaattttgcaacagtaaaagaattgtgaaggacat |
21925644 |
T |
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| Q |
255 |
gatagacatggagggattggaagagaatgacaatgaaggaatagaggttccgtatttcgatttcgagagcatactagtggccacagatgacttttctgat |
354 |
Q |
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|||||| || || | ||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||||||||||| ||||||| || || |
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| T |
21925643 |
gatagaaatagaagatttggaagagaatgacaatgaaggaatagaggttccctattttgattttgagagtatactagtggccacaaatgacttctcatat |
21925544 |
T |
|
| Q |
355 |
gcaaacaaacttggaaaaggtggttttgggccagtttacaaggtgattgatttttccttctacctatcttcctggtcagactagattttaaattaagtaa |
454 |
Q |
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| T |
21925543 |
gcaaataaacttggcaaaggtggttttggaccagtttacaaggtgattga-ttttccttctatttatcttttctgtcggtctagatttcaagttaaataa |
21925445 |
T |
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| Q |
455 |
tgacct-gttgagattatattttagggtaagcttggtggtcaagaaattgcagtaaagagactttcaaatgtttcatcacaaggcttacaggaatttaag |
553 |
Q |
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|| | | || | ||| | ||||||||||| ||||||||||||||||||| |||||||||| |||| ||||||||||||||| | || |||||| ||| |
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| T |
21925444 |
tggcttcgtggggat--ttttttagggtaaatttggtggtcaagaaattgcgataaagagactctcaagtgtttcatcacaaggttcactggaattcaag |
21925347 |
T |
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| Q |
554 |
aatgaggttgttttgat |
570 |
Q |
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||||||||||||||||| |
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| T |
21925346 |
aatgaggttgttttgat |
21925330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 21925877 - 21925810
Alignment:
| Q |
18 |
ctctagtaggcatcattatttttgcttatgcatgcagaggaagaatagcgcatatgattaagcaaggt |
85 |
Q |
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| T |
21925877 |
ctctagcatgcatcattatttttgcttatgcatgcagaagaagagtagctcatatggttaagcaaggt |
21925810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 488 - 592
Target Start/End: Original strand, 21935984 - 21936088
Alignment:
| Q |
488 |
ggtggtcaagaaattgcagtaaagagactttcaaatgtttcatcacaaggcttacaggaatttaagaatgaggttgttttgattgctaaacttcaacatc |
587 |
Q |
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||||| ||||||||||||||||| |||||||||| | ||| |||||| | |||| ||||||||||| ||||||||||| || ||||||||||||| |
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| T |
21935984 |
ggtggacaagaaattgcagtaaaaagactttcaagttgttctggacaaggtatggaggagtttaagaatgaagttgttttgatcgcgaaacttcaacatc |
21936083 |
T |
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| Q |
588 |
gaaac |
592 |
Q |
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| T |
21936084 |
gaaac |
21936088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 572 - 606
Target Start/End: Complemental strand, 21918349 - 21918315
Alignment:
| Q |
572 |
gctaaacttcaacatcgaaaccttgttaaattacg |
606 |
Q |
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| T |
21918349 |
gctaaacttcaacatcgtaaccttgttaaattacg |
21918315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 491 - 599
Target Start/End: Complemental strand, 37714322 - 37714214
Alignment:
| Q |
491 |
ggtcaagaaattgcagtaaagagactttcaaatgtttcatcacaaggcttacaggaatttaagaatgaggttgttttgattgctaaacttcaacatcgaa |
590 |
Q |
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|||||||| ||||| | ||||| ||||| | ||||||| | |||||||| || |||||||| |||||| ||||||||||||| |||||||||||||||| |
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| T |
37714322 |
ggtcaagagattgctatcaagaggctttcgagtgtttcaactcaaggcttgcaagaatttaaaaatgagattgttttgattgccaaacttcaacatcgaa |
37714223 |
T |
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| Q |
591 |
accttgtta |
599 |
Q |
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| T |
37714222 |
atcttgtta |
37714214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 497 - 585
Target Start/End: Complemental strand, 36438241 - 36438153
Alignment:
| Q |
497 |
gaaattgcagtaaagagactttcaaatgtttcatcacaaggcttacaggaatttaagaatgaggttgttttgattgctaaacttcaaca |
585 |
Q |
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|||||||||||||||||||| ||||| ||| ||||||| || | || ||||| |||||||||||||||||| | ||||||||||| |
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| T |
36438241 |
gaaattgcagtaaagagactgtcaaagcattccggacaaggcatagaagagtttaaaaatgaggttgttttgatttcaaaacttcaaca |
36438153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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