View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8516_low_21 (Length: 316)
Name: NF8516_low_21
Description: NF8516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8516_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 48 - 306
Target Start/End: Original strand, 55067744 - 55068002
Alignment:
| Q |
48 |
taaataggaaaaaagaagagagtgtgtatgaacgaacctgtaaatcagcggtgatttcaacgtcggtgatagtggttacggaagagagatataaatcagc |
147 |
Q |
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| T |
55067744 |
taaataggaaaaaagaagagagtatgtatgaacgaacctgtaaatcagcggtgatttcaacgtcggtaatagtggttacggaagagagatataaatcagc |
55067843 |
T |
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| Q |
148 |
acctaaggaagcttctggaagaacggcaaattgcaagacgttatcggtgatgagcatatcagaaagttctctcctaatttgtttggcaaccattttgact |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55067844 |
acctaaggaagcttctggaagaacggcaaattgcaagacgttatcggtgatgagcatatcagaaagttctctcctaatttgtttggcaaccattttgact |
55067943 |
T |
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| Q |
248 |
ctccttggattagccatacactttatcgttattcttgaagcatttcctgtgagtctctg |
306 |
Q |
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| T |
55067944 |
ctccttggattagccatacactttatcgttattcttgaagcatttcctgtgagtctctg |
55068002 |
T |
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