View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8516_low_27 (Length: 261)
Name: NF8516_low_27
Description: NF8516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8516_low_27 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 9384524 - 9384767
Alignment:
| Q |
1 |
ttttttaatgaccaataatataaatctaaaacatcaatggtcacaaagtattgcatcaaaggtccaataatataattctaaaacatgaagctctcattca |
100 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9384524 |
ttttgtaatgaccaataatataattctaaaacatcaatggtcacaaagtattgcatcaaaggtccaataatataattctaaaacatgaagctctcgttca |
9384623 |
T |
|
| Q |
101 |
aacatggattgattttcactacaagatcattctctcatttacaaaaggacattaatttttactccacctatgttagcctaatgagctaacatattcaaac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
9384624 |
aacatggattgattttcactacaagatcattctctcatttacaaaaggacattaatttttactccacctatgttagcctaatgagttaacatattcaaac |
9384723 |
T |
|
| Q |
201 |
acaacactctattttttaccaaacatctaaatatgcaatctaat |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9384724 |
acaacactctattttttaccaaacatctaaatatgcaatctaat |
9384767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 134; Significance: 8e-70; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 91 - 244
Target Start/End: Original strand, 31947700 - 31947853
Alignment:
| Q |
91 |
ctctcattcaaacatggattgattttcactacaagatcattctctcatttacaaaaggacattaatttttactccacctatgttagcctaatgagctaac |
190 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31947700 |
ctctcattcaaacatggattgaattttactacaagatcattctctcatttacaaaaggacattaatttttactctacctatgttagcctaatgagctaac |
31947799 |
T |
|
| Q |
191 |
atattcaaacacaacactctattttttaccaaacatctaaatatgcaatctaat |
244 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
31947800 |
atatttaaacacaacactctattttttaccaaacagctaaatatgcaatctaat |
31947853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 31947636 - 31947683
Alignment:
| Q |
1 |
ttttttaatgaccaataatataaatctaaaacatcaatggtcacaaag |
48 |
Q |
| |
|
||||| ||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
31947636 |
tttttgaatgaccaataatataattctaagacatcaatggtcacaaag |
31947683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University