View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8516_low_3 (Length: 536)
Name: NF8516_low_3
Description: NF8516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8516_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 17 - 528
Target Start/End: Original strand, 14544857 - 14545363
Alignment:
| Q |
17 |
aaattaaactaagtttgatcgtaactactctgcaacgtgacggtcttaatctagtttaacgaatttctgcaattgctaataaattgtttaggttggtgct |
116 |
Q |
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| T |
14544857 |
aaattaaactaagtctgatcgtaactactctgcaacgtgacggtcttaatccagtttaacgaatttctataattgctaataaattgtttaggttggtgct |
14544956 |
T |
|
| Q |
117 |
cctcctgaaattgcaagtttattggaagagattcgaagagaaaacgatatgtgtaaaagagacgttgttgtttccacgtgttttggagccgatcccgagc |
216 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14544957 |
cctcctgaaattgcaagtttattggaggagattcgaagagaaaacgatatgtgtaaaagagacgttgttgtttccacgtgttttggagccgatcccgagc |
14545056 |
T |
|
| Q |
217 |
ttgatgaatttatggt-ccccccttaaatcctttctttctttctttgtttcgctcgcacgaacacaaaaatatattta-nnnnnnnattttattgaaaat |
314 |
Q |
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|||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||| | || |||||||||||||| |
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| T |
14545057 |
ttgatgaatttatggtcccccccttaaatc----ctttctttctttgtttcgcttgcacgaacacaaaaatatttatattttttttattttattgaaaat |
14545152 |
T |
|
| Q |
315 |
aaataaattaaatgcaactttattgatgttgattatggttgtttcaggaaagttattgtgacatgcttgtgaagtataaatcagaccttactcgaccttt |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14545153 |
aaataaattaaatgcaactttattgatgttgattatggttgtttcaggaaagttattgtgacatgcttgtgaagtataaatcagaccttactcgaccttt |
14545252 |
T |
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| Q |
415 |
tgacgaagctaaaacgtttctgaacaagatcgaaactcaactcagtcatctctgcactggtggtggtgctgctgctgcttcacttccaactgcttctggt |
514 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
14545253 |
tgacgaagctacaacgtttctgaacaagatcgaaactcaactcagtcatctctgcac---tggtggtgctgctgctgcttcacttccaactgcttctggt |
14545349 |
T |
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| Q |
515 |
ttgtttttcttctc |
528 |
Q |
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|||||||||||||| |
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| T |
14545350 |
ttgtttttcttctc |
14545363 |
T |
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