View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8516_low_31 (Length: 227)

Name: NF8516_low_31
Description: NF8516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8516_low_31
NF8516_low_31
[»] chr3 (3 HSPs)
chr3 (146-212)||(42832815-42832881)
chr3 (18-55)||(42832692-42832729)
chr3 (82-117)||(42832756-42832791)
[»] chr7 (2 HSPs)
chr7 (21-52)||(41940874-41940905)
chr7 (20-52)||(28815840-28815872)


Alignment Details
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 146 - 212
Target Start/End: Original strand, 42832815 - 42832881
Alignment:
Q  146 accagataaaatagtgaaagtggtagtgcatagtgtgaattaaaggttgttatgttgattgatgtcc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  42832815 accagataaaatagtgaaagtggtagtgcatagtgtgaattaaagattgttatgttgattgatgtcc 42832881  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 42832692 - 42832729
Alignment:
Q  18 tataaaactaccaatggatccttctgagccttcatctc 55  Q
    ||||||||||||||||||||||||||||||||||||||    
T  42832692 tataaaactaccaatggatccttctgagccttcatctc 42832729  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 117
Target Start/End: Original strand, 42832756 - 42832791
Alignment:
Q  82 agggtagatttcaaaaacatgatacaagtcgctgca 117  Q
    ||||||||||||||||||||||||||||||||||||    
T  42832756 agggtagatttcaaaaacatgatacaagtcgctgca 42832791  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 52
Target Start/End: Original strand, 41940874 - 41940905
Alignment:
Q  21 aaaactaccaatggatccttctgagccttcat 52  Q
    ||||||||||||||||||||||||||||||||    
T  41940874 aaaactaccaatggatccttctgagccttcat 41940905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 28815840 - 28815872
Alignment:
Q  20 taaaactaccaatggatccttctgagccttcat 52  Q
    ||||| |||||||||||||||||||||||||||    
T  28815840 taaaattaccaatggatccttctgagccttcat 28815872  T

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