View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8516_low_32 (Length: 225)
Name: NF8516_low_32
Description: NF8516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8516_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 16 - 209
Target Start/End: Complemental strand, 24509849 - 24509656
Alignment:
| Q |
16 |
tcagagacatcatgtagaacatttgtcctacgagtaccagaatttcaaaactaactcgcaaagtgtaatttatatgaatgaaaggaaatttgtttataaa |
115 |
Q |
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| T |
24509849 |
tcagagacatcatgtagaacatttgtcctacgagtactagaatttcaaaactaactcccaaagtgtaatttatatgaatgaaaggaaatttgtttataaa |
24509750 |
T |
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| Q |
116 |
atctccatcaaacgacactcgacccataatgcaatttgagttgaattacaatgaatcaatttatcaacattgacactgtcaaacgactttcaac |
209 |
Q |
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| T |
24509749 |
atctccatcaaacgacactcgacccataatgcaatttgagttgacttacaatgaattaatttatcaacattgacactgtcaaacgactttcaac |
24509656 |
T |
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