View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8516_low_5 (Length: 486)
Name: NF8516_low_5
Description: NF8516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8516_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 16 - 477
Target Start/End: Original strand, 50756110 - 50756571
Alignment:
| Q |
16 |
aggaaagaggcagatagagtactagtggcactgacaaaacttgagttcagtagtcatcaacagctaagaaatcaatgaataatcagtaaataatcatgtt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
50756110 |
aggaaagaggcagatagagtactagtggcactgacaaagcttgagttcagtagtcatcaacagctaagaaaacaatgaataatcagtaaataatcatgtt |
50756209 |
T |
|
| Q |
116 |
taagatttatgattatgacaggtgtagggtgagtgaatatacagaagcagtgaaagaggtggcatgtgagatattagagctaatggcagagggtttgggg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50756210 |
taagatttatgattatgacaggtgtagggtgagtgaatatacagaagcagtgaaagaggtggcatgtgagatattagagctaatggcagagggtttgggg |
50756309 |
T |
|
| Q |
216 |
gtccctgatacaaaggttttcagcagtttgataaaggatattgatagtgactcagttcttaggctcaatcactacccacctacacttaacaaggacaagt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50756310 |
gtccctgatacaaaggttttcagcagtttgataaaggatattgatagtgactcagttcttaggctcaatcactacccacctacacttaacaaggacaagt |
50756409 |
T |
|
| Q |
316 |
cacattccaacaatgttggctttggggagcattctgaccctcagatcttgaccattcttagatctaatgacgtttctggtcttcaaatttctcttcaaca |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50756410 |
cacattccaacaatgttggctttggggagcattctgaccctcagatcttgaccattcttagatctaatgacgtttctggtcttcaaatttctcttcaaca |
50756509 |
T |
|
| Q |
416 |
tggtctctggattcctgttaaccctgacccagaagctctatgtattaatataggtgatgtcc |
477 |
Q |
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| T |
50756510 |
tggtctctggattcctgttaaccctgacccagaagctctatgtattaatataggtgatgtcc |
50756571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 8e-53; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 368 - 477
Target Start/End: Complemental strand, 4320417 - 4320308
Alignment:
| Q |
368 |
cattcttagatctaatgacgtttctggtcttcaaatttctcttcaacatggtctctggattcctgttaaccctgacccagaagctctatgtattaatata |
467 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4320417 |
cattcttagatctaatgacgtttctggtcttcaaatttctcttcaacatggtctctggattcctgttaaccctgacccagaagctctatgtgttaatata |
4320318 |
T |
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| Q |
468 |
ggtgatgtcc |
477 |
Q |
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|||||||||| |
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| T |
4320317 |
ggtgatgtcc |
4320308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 130 - 419
Target Start/End: Complemental strand, 12610686 - 12610391
Alignment:
| Q |
130 |
atgacaggtgtagggtgagtgaatatacagaagcagtgaaagaggtggcatgtgagatattagagctaatggcagagggtttgggggtccctgatacaaa |
229 |
Q |
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||||||| | ||| || |||| |||||||||||| ||||| ||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
12610686 |
atgacagctctagtgtaagtgcatatacagaagctgtgaaggagctggcatgtgagatattggagctaatggcagaaggtttgggggtccctgatacatc |
12610587 |
T |
|
| Q |
230 |
ggttttcagcagtttgataaaggatattgatagtgactcagttcttaggctcaatcactacccacct--acacttaaca---ag-gacaagtcacattcc |
323 |
Q |
| |
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||||||||| || || | | |||||| ||||||| | |||||| ||||||||||||| ||| | ||| | | || ||||| || ||||| |
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| T |
12610586 |
cattttcagcacattcatcactcaacttgataatgactcactccttaggttcaatcactaccctcctaaagactgcaaagatagagacaactctaattcc |
12610487 |
T |
|
| Q |
324 |
aacaatgttggctttggggagcattctgaccctcagatcttgaccattcttagatctaatgacgtttctggtcttcaaatttctcttcaacatggt |
419 |
Q |
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|||| ||||||||||| || ||||||||||||||||| | || || |||||||| || || ||| ||||||| |||||||| |||||||||||| |
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| T |
12610486 |
tacaacgttggctttggagaacattctgaccctcagattcttactatccttagatccaacgatgttgctggtctccaaatttcacttcaacatggt |
12610391 |
T |
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