View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8517_high_11 (Length: 239)
Name: NF8517_high_11
Description: NF8517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8517_high_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 51155244 - 51155468
Alignment:
| Q |
1 |
tttagctttttctttcttaaataatttatagtttataaaatttaatgatatactccaaacttttttactcacttattccttggctatgagtttggatatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
51155244 |
tttagctttttctttcttaaataatttatagtttataaaatttaatgatatactccaaacttttttactcacttcttccttggctatgagtttggatatc |
51155343 |
T |
|
| Q |
101 |
tgaaatgcaggtttccattcatttattct--cacaatttttcaggtatcttccgtataggaaactgtgacttgcacgagatatcatgtacagagtgatag |
198 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
51155344 |
tgaaatgcaggtttccattcatttattctcacacaatttttcaggtatcttccgtataggaaactgtgacttgcacgagatatcatgtacagtgtgatag |
51155443 |
T |
|
| Q |
199 |
ttcttaatttcttgtagagaatttt |
223 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
51155444 |
ttcttaatttcttgtagagaatttt |
51155468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University