View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8517_high_13 (Length: 224)
Name: NF8517_high_13
Description: NF8517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8517_high_13 |
 | |
|
| [»] scaffold0044 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 30697325 - 30697120
Alignment:
| Q |
1 |
tctgaatatacaacattaagcagctcctttgatctacttgctgcagttgaactgaatgcacttctgggttgctttcccaacaagcaagtatcacaaactg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
30697325 |
tctgaatatacaacattaagcagctcctttgatctacttgctgaacttgaactgaatgcacttctaggttgctttcccaacaagcaagtatcacaaactg |
30697226 |
T |
|
| Q |
101 |
tgttaggtatctcaattttaggtactcccataatcatattcttatcaaccaattgattaagacctctaaaattgagatgaccaaacctatagtgccataa |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30697225 |
tgttaggtatctcaattttaggcactcccagaatcatttctttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataa |
30697126 |
T |
|
| Q |
201 |
ccagct |
206 |
Q |
| |
|
|||||| |
|
|
| T |
30697125 |
ccagct |
30697120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 12020818 - 12020613
Alignment:
| Q |
1 |
tctgaatatacaacattaagcagctcctttgatctacttgctgcagttgaactgaatgcacttctgggttgctttcccaacaagcaagtatcacaaactg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
12020818 |
tctgaatatacaacattaagcagctcctttgatctacttgctgaacttgaactgaatgcacttctaggttgctttcccaacaagcaagtatcacagactg |
12020719 |
T |
|
| Q |
101 |
tgttaggtatctcaattttaggtactcccataatcatattcttatcaaccaattgattaagacctctaaaattgagatgaccaaacctatagtgccataa |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
12020718 |
tgttaggtatctcaattttaggcactcccagaatcatttctttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataa |
12020619 |
T |
|
| Q |
201 |
ccagct |
206 |
Q |
| |
|
|||||| |
|
|
| T |
12020618 |
ccagct |
12020613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 37679565 - 37679360
Alignment:
| Q |
1 |
tctgaatatacaacattaagcagctcctttgatctacttgctgcagttgaactgaatgcacttctgggttgctttcccaacaagcaagtatcacaaactg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
37679565 |
tctgaatatacaacattaagcagctcctttaatctacttgctgaacttgaactgaatgcacttctaggttgctttcccaacaagcaagtatcacagactg |
37679466 |
T |
|
| Q |
101 |
tgttaggtatctcaattttaggtactcccataatcatattcttatcaaccaattgattaagacctctaaaattgagatgaccaaacctatagtgccataa |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
37679465 |
tgttaggtatctcaattttaggcactcccagaatcatttctttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataa |
37679366 |
T |
|
| Q |
201 |
ccagct |
206 |
Q |
| |
|
|||||| |
|
|
| T |
37679365 |
ccagct |
37679360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 16796198 - 16795996
Alignment:
| Q |
1 |
tctgaatatacaacattaagcagctcctttgatctacttgctgcagttgaactgaatgcacttctgggttgctttcccaacaagcaagtatcacaaactg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||| |||| |||| |
|
|
| T |
16796198 |
tctgaatatacaacattaagcagctcctttgatctacttgctgaacttgaactgaatgcacttcttggttgctttcccaacaagcaagtaccacagactg |
16796099 |
T |
|
| Q |
101 |
tgttaggtatctcaattttaggtactcccataatcatattcttatcaaccaattgattaagacctctaaaattgagatgaccaaacctatagtgccataa |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
16796098 |
tgttaggtatctcaattttaggaactcccagaatcatttctttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataa |
16795999 |
T |
|
| Q |
201 |
cca |
203 |
Q |
| |
|
||| |
|
|
| T |
16795998 |
cca |
16795996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 40369875 - 40370080
Alignment:
| Q |
1 |
tctgaatatacaacattaagcagctcctttgatctacttgctgcagttgaactgaatgcacttctgggttgctttcccaacaagcaagtatcacaaactg |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
40369875 |
tctgaatatacaacattaagtagctcctttgatctacttgctgaacttgaactgaatgcacttctaggttgctttcccaacaagcaagtatcacaaactg |
40369974 |
T |
|
| Q |
101 |
tgttaggtatctcaattttaggtactcccataatcatattcttatcaaccaattgattaagacctctaaaattgagatgaccaaacctatagtgccataa |
200 |
Q |
| |
|
|||||| ||||||||||||||| ||||||| |||||| | |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
40369975 |
tgttagatatctcaattttaggcactcccagaatcatttctttatcaaccaattggttaagacctctaaaattgagatgaccaaatctatagtgccataa |
40370074 |
T |
|
| Q |
201 |
ccagct |
206 |
Q |
| |
|
|||||| |
|
|
| T |
40370075 |
ccagct |
40370080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 7102002 - 7102204
Alignment:
| Q |
1 |
tctgaatatacaacattaagcagctcctttgatctacttgctgcagttgaactgaatgcacttctgggttgctttcccaacaagcaagtatcacaaactg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||| |||| |||| |
|
|
| T |
7102002 |
tctgaatatacaacattaagcagctcctttgatctacttgctgaacttgaactgaatgcacttcttggttgctttcccaacaagcaagtaccacagactg |
7102101 |
T |
|
| Q |
101 |
tgttaggtatctcaattttaggtactcccataatcatattcttatcaaccaattgattaagacctctaaaattgagatgaccaaacctatagtgccataa |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
7102102 |
tgttaggtatctcaattttaggaactcccagaatcatttctttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatattgccataa |
7102201 |
T |
|
| Q |
201 |
cca |
203 |
Q |
| |
|
||| |
|
|
| T |
7102202 |
cca |
7102204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 10276553 - 10276352
Alignment:
| Q |
1 |
tctgaatatacaacattaagcagctcctttgatctacttgctgcagttgaactgaatgcacttctgggttgctttcccaacaagcaagtatcacaaactg |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| ||||||||| | ||||||| ||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
10276553 |
tctgaatatacaacattaagcagcttctttgatttacttgctgaacttgaacttaatgcacttctaggttgcttccccaacaagcaagtatcacaaactg |
10276454 |
T |
|
| Q |
101 |
tgttaggtatctcaattttaggtactcccataatcatattcttatcaaccaattgattaagacctctaaaattgagatgaccaaacctatagtgccataa |
200 |
Q |
| |
|
|||||| ||||||||||||||| ||||||| |||||| | |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
10276453 |
tgttagatatctcaattttaggcactcccagaatcatttctttataaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataa |
10276354 |
T |
|
| Q |
201 |
cc |
202 |
Q |
| |
|
|| |
|
|
| T |
10276353 |
cc |
10276352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 107 - 203
Target Start/End: Original strand, 15065043 - 15065139
Alignment:
| Q |
107 |
gtatctcaattttaggtactcccataatcatattcttatcaaccaattgattaagacctctaaaattgagatgaccaaacctatagtgccataacca |
203 |
Q |
| |
|
||||||| | |||||||||||| | |||||| | ||||||||||||||| |||||| ||| ||||||||| ||||||| |||||||||||||||| |
|
|
| T |
15065043 |
gtatctccaatttaggtactccaagaatcatgtctttatcaaccaattgaataagactcctacaattgagataaccaaacatatagtgccataacca |
15065139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0044 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 47493 - 47698
Alignment:
| Q |
1 |
tctgaatatacaacattaagcagctcctttgatctacttgctgcagttgaactgaatgcacttctgggttgctttcccaacaagcaagtatcacaaactg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
47493 |
tctgaatatacaacattaagcagctcctttgatctacttgctgaacttgaactgaatgcacttctaggttgctttcccaacaagcaagtatcacagactg |
47592 |
T |
|
| Q |
101 |
tgttaggtatctcaattttaggtactcccataatcatattcttatcaaccaattgattaagacctctaaaattgagatgaccaaacctatagtgccataa |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
47593 |
tgttaggtatctcaattttaggcactcccagaatcatttctttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataa |
47692 |
T |
|
| Q |
201 |
ccagct |
206 |
Q |
| |
|
|||||| |
|
|
| T |
47693 |
ccagct |
47698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 27188165 - 27187965
Alignment:
| Q |
1 |
tctgaatatacaacattaagcagctcctttgatctacttgctgcagttgaactgaatgcacttctgggttgctttcccaacaagcaagtatcacaaactg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
27188165 |
tctgaatatacaacattaagcagctcctttgatctacttgttgcacttgaactgaatgcacttctaggttgcttgcccaacaagcaagtatcacaaactc |
27188066 |
T |
|
| Q |
101 |
tgttaggtatctcaattttaggtactcccataatcatattcttatcaaccaattgattaagacctctaaaattgagatgaccaaacctatagtgccataa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27188065 |
tgttaggtatctcaattttaggtactcccagaatcatttctttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataa |
27187966 |
T |
|
| Q |
201 |
c |
201 |
Q |
| |
|
| |
|
|
| T |
27187965 |
c |
27187965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 44149087 - 44148885
Alignment:
| Q |
1 |
tctgaatatacaacattaagcagctcctttgatctacttgctgcagttgaactgaatgcacttctgggttgctttcccaacaagcaagtatcacaaactg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||| |||| |||| |
|
|
| T |
44149087 |
tctgaatatacaacattaagcagctcctttgatctacttgctgaacttgaactgaatgcacttcttggttgctttcccaacaagcaagtaccacagactg |
44148988 |
T |
|
| Q |
101 |
tgttaggtatctcaattttaggtactcccataatcatattcttatcaaccaattgattaagacctctaaaattgagatgaccaaacctatagtgccataa |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
44148987 |
tgttaggtatctcaattttaggaactcccagaatcatttctttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataa |
44148888 |
T |
|
| Q |
201 |
cca |
203 |
Q |
| |
|
||| |
|
|
| T |
44148887 |
cca |
44148885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 31356691 - 31356486
Alignment:
| Q |
1 |
tctgaatatacaacattaagcagctcctttgatctacttgctgcagttgaactgaatgcacttctgggttgctttcccaacaagcaagtatcacaaactg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||| |||||||||||||||||||||| || |
|
|
| T |
31356691 |
tctgaatatacaacattaagcagctcctttgatctacttattgcacttgaactgaatgcacttctaggttgcttgcccaacaagcaagtatcacaaagtg |
31356592 |
T |
|
| Q |
101 |
tgttaggtatctcaattttaggtactcccataatcatattcttatcaaccaattgattaagacctctaaaattgagatgaccaaacctatagtgccataa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| | |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31356591 |
tgttaggtatctcaattttaggtactcccaaaatcatttctttatcatccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataa |
31356492 |
T |
|
| Q |
201 |
ccagct |
206 |
Q |
| |
|
|||||| |
|
|
| T |
31356491 |
ccagct |
31356486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 118 - 206
Target Start/End: Original strand, 43681937 - 43682025
Alignment:
| Q |
118 |
ttaggtactcccataatcatattcttatcaaccaattgattaagacctctaaaattgagatgaccaaacctatagtgccataaccagct |
206 |
Q |
| |
|
||||||||||||| |||||| | ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
43681937 |
ttaggtactcccaaaatcatttctttatcaaccaattgattaagacctctaaaattgggatgaccaaatctatagtgccataaccagct |
43682025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 161; Significance: 5e-86; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 9699608 - 9699408
Alignment:
| Q |
1 |
tctgaatatacaacattaagcagctcctttgatctacttgctgcagttgaactgaatgcacttctgggttgctttcccaacaagcaagtatcacaaactg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
9699608 |
tctgaatatacaacattaagcagctcctttgatctacttgttgcacttgaactgaatgcacttctaggttgcttgcccaacaagcaagtatcacaaactc |
9699509 |
T |
|
| Q |
101 |
tgttaggtatctcaattttaggtactcccataatcatattcttatcaaccaattgattaagacctctaaaattgagatgaccaaacctatagtgccataa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
9699508 |
tgttaggtatctcaattttaggtactcccagaatcatttctttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataa |
9699409 |
T |
|
| Q |
201 |
c |
201 |
Q |
| |
|
| |
|
|
| T |
9699408 |
c |
9699408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 54169972 - 54170174
Alignment:
| Q |
1 |
tctgaatatacaacattaagcagctcctttgatctacttgctgcagttgaactgaatgcacttctgggttgctttcccaacaagcaagtatcacaaactg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||| |||| |||| |
|
|
| T |
54169972 |
tctgaatatacaacattaagcagctcctttgatctacttgctgaacttgaactgaatgcacttcttggttgctttcccaacaagcaagtaccacagactg |
54170071 |
T |
|
| Q |
101 |
tgttaggtatctcaattttaggtactcccataatcatattcttatcaaccaattgattaagacctctaaaattgagatgaccaaacctatagtgccataa |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
54170072 |
tgttaggtatctcaattttaggaactcccagaatcatttctttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataa |
54170171 |
T |
|
| Q |
201 |
cca |
203 |
Q |
| |
|
||| |
|
|
| T |
54170172 |
cca |
54170174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 5 - 206
Target Start/End: Complemental strand, 43551817 - 43551616
Alignment:
| Q |
5 |
aatatacaacattaagcagctcctttgatctacttgctgcagttgaactgaatgcacttctgggttgctttcccaacaagcaagtatcacaaactgtgtt |
104 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||| |||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
43551817 |
aatatacaacatcaagcagctcctttgatctacttgctgcacttgaactgaacgcacttctaggttgcttgcccaacaagcaagtataacaaactgtgtt |
43551718 |
T |
|
| Q |
105 |
aggtatctcaattttaggtactcccataatcatattcttatcaaccaattgattaagacctctaaaattgagatgaccaaacctatagtgccataaccag |
204 |
Q |
| |
|
|||||||||||||||||||||||| | |||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
43551717 |
aggtatctcaattttaggtactcctagaatcatttctttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataaccag |
43551618 |
T |
|
| Q |
205 |
ct |
206 |
Q |
| |
|
|| |
|
|
| T |
43551617 |
ct |
43551616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 116 - 206
Target Start/End: Complemental strand, 21849037 - 21848947
Alignment:
| Q |
116 |
ttttaggtactcccataatcatattcttatcaaccaattgattaagacctctaaaattgagatgaccaaacctatagtgccataaccagct |
206 |
Q |
| |
|
||||||| ||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
21849037 |
ttttaggcactcccagaatcatttctttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataaccagct |
21848947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 159; Significance: 8e-85; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 200312 - 200514
Alignment:
| Q |
1 |
tctgaatatacaacattaagcagctcctttgatctacttgctgcagttgaactgaatgcacttctgggttgctttcccaacaagcaagtatcacaaactg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||| |||| |||| |
|
|
| T |
200312 |
tctgaatatacaacattaagcagctcctttgatctacttgctgaacttgaactgaatgcacttcttggttgctttcccaacaagcaagtaccacagactg |
200411 |
T |
|
| Q |
101 |
tgttaggtatctcaattttaggtactcccataatcatattcttatcaaccaattgattaagacctctaaaattgagatgaccaaacctatagtgccataa |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
200412 |
tgttaggtatctcaattttaggaactcccagaatcatttctttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataa |
200511 |
T |
|
| Q |
201 |
cca |
203 |
Q |
| |
|
||| |
|
|
| T |
200512 |
cca |
200514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 315149 - 315351
Alignment:
| Q |
1 |
tctgaatatacaacattaagcagctcctttgatctacttgctgcagttgaactgaatgcacttctgggttgctttcccaacaagcaagtatcacaaactg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||| |||| |||| |
|
|
| T |
315149 |
tctgaatatacaacattaagcagctcctttgatctacttgctgaacttgaactgaatgcacttcttggttgctttcccaacaagcaagtaccacagactg |
315248 |
T |
|
| Q |
101 |
tgttaggtatctcaattttaggtactcccataatcatattcttatcaaccaattgattaagacctctaaaattgagatgaccaaacctatagtgccataa |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
315249 |
tgttaggtatctcaattttaggaactcccagaatcatttctttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataa |
315348 |
T |
|
| Q |
201 |
cca |
203 |
Q |
| |
|
||| |
|
|
| T |
315349 |
cca |
315351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 30408431 - 30408633
Alignment:
| Q |
1 |
tctgaatatacaacattaagcagctcctttgatctacttgctgcagttgaactgaatgcacttctgggttgctttcccaacaagcaagtatcacaaactg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||| |||| |||| |
|
|
| T |
30408431 |
tctgaatatacaacattaagcagctcctttgatctacttgctgaacttgaactgaatgcacttcttggttgctttcccaacaagcaagtaccacagactg |
30408530 |
T |
|
| Q |
101 |
tgttaggtatctcaattttaggtactcccataatcatattcttatcaaccaattgattaagacctctaaaattgagatgaccaaacctatagtgccataa |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30408531 |
tgttaggtatctcaattttaggaactcccagaatcatttctttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataa |
30408630 |
T |
|
| Q |
201 |
cca |
203 |
Q |
| |
|
||| |
|
|
| T |
30408631 |
cca |
30408633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 43810111 - 43810313
Alignment:
| Q |
1 |
tctgaatatacaacattaagcagctcctttgatctacttgctgcagttgaactgaatgcacttctgggttgctttcccaacaagcaagtatcacaaactg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||| |||| |||| |
|
|
| T |
43810111 |
tctgaatatacaacattaagcagctcctttgatctacttgctgaacttgaactgaatgcacttcttggttgctttcccaacaagcaagtaccacagactg |
43810210 |
T |
|
| Q |
101 |
tgttaggtatctcaattttaggtactcccataatcatattcttatcaaccaattgattaagacctctaaaattgagatgaccaaacctatagtgccataa |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
43810211 |
tgttaggtatctcaattttaggaactcccagaatcatttctttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataa |
43810310 |
T |
|
| Q |
201 |
cca |
203 |
Q |
| |
|
||| |
|
|
| T |
43810311 |
cca |
43810313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 1288854 - 1288652
Alignment:
| Q |
1 |
tctgaatatacaacattaagcagctcctttgatctacttgctgcagttgaactgaatgcacttctgggttgctttcccaacaagcaagtatcacaaactg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||| |||| |||||||||||||||||||||| || |
|
|
| T |
1288854 |
tctgaatatacaacattaagcagctcctttgatctacttgctgcacttgaactgaatacacttctaggtcgcttgcccaacaagcaagtatcacaaattg |
1288755 |
T |
|
| Q |
101 |
tgttaggtatctcaattttaggtactcccataatcatattcttatcaaccaattgattaagacctctaaaattgagatgaccaaacctatagtgccataa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
1288754 |
tgttaggtatctcaattttaggtactcctagaatcatttctttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgtcataa |
1288655 |
T |
|
| Q |
201 |
cca |
203 |
Q |
| |
|
||| |
|
|
| T |
1288654 |
cca |
1288652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 3 - 206
Target Start/End: Complemental strand, 41947342 - 41947139
Alignment:
| Q |
3 |
tgaatatacaacattaagcagctcctttgatctacttgctgcagttgaactgaatgcacttctgggttgctttcccaacaagcaagtatcacaaactgtg |
102 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| || | ||||| ||||||||||||| |||||||| |||||||||||||| ||||||||| | |
|
|
| T |
41947342 |
tgaatatacaacattaagcagctcatttgatctacttgttgaacttgaattgaatgcacttctaggttgcttgcccaacaagcaagtgtcacaaactata |
41947243 |
T |
|
| Q |
103 |
ttaggtatctcaattttaggtactcccataatcatattcttatcaaccaattgattaagacctctaaaattgagatgaccaaacctatagtgccataacc |
202 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
41947242 |
ttaggtatctcaattttaggtactcccagaatcatatctttatcaactaattgattaagacctctaaaattgagatgaccaaatctataatgccataacc |
41947143 |
T |
|
| Q |
203 |
agct |
206 |
Q |
| |
|
|||| |
|
|
| T |
41947142 |
agct |
41947139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 159; Significance: 8e-85; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 7942711 - 7942913
Alignment:
| Q |
1 |
tctgaatatacaacattaagcagctcctttgatctacttgctgcagttgaactgaatgcacttctgggttgctttcccaacaagcaagtatcacaaactg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||| |||| |||| |
|
|
| T |
7942711 |
tctgaatatacaacattaagcagctcctttgatctacttgctgaacttgaactgaatgcacttcttggttgctttcccaacaagcaagtaccacagactg |
7942810 |
T |
|
| Q |
101 |
tgttaggtatctcaattttaggtactcccataatcatattcttatcaaccaattgattaagacctctaaaattgagatgaccaaacctatagtgccataa |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
7942811 |
tgttaggtatctcaattttaggaactcccagaatcatttctttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataa |
7942910 |
T |
|
| Q |
201 |
cca |
203 |
Q |
| |
|
||| |
|
|
| T |
7942911 |
cca |
7942913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 27758926 - 27758724
Alignment:
| Q |
1 |
tctgaatatacaacattaagcagctcctttgatctacttgctgcagttgaactgaatgcacttctgggttgctttcccaacaagcaagtatcacaaactg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||| ||||||||||| |||| |
|
|
| T |
27758926 |
tctgaatatacaacattaagcagctcctttgatctacttgctgaacttgaactgaatgcacttcttggttgctttcccaacaaacaagtatcacagactg |
27758827 |
T |
|
| Q |
101 |
tgttaggtatctcaattttaggtactcccataatcatattcttatcaaccaattgattaagacctctaaaattgagatgaccaaacctatagtgccataa |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27758826 |
tgttaggtatctcaattttaggaactcccagaatcatttctttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataa |
27758727 |
T |
|
| Q |
201 |
cca |
203 |
Q |
| |
|
||| |
|
|
| T |
27758726 |
cca |
27758724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 159; Significance: 8e-85; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 8318132 - 8318334
Alignment:
| Q |
1 |
tctgaatatacaacattaagcagctcctttgatctacttgctgcagttgaactgaatgcacttctgggttgctttcccaacaagcaagtatcacaaactg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||| |||| |||| |
|
|
| T |
8318132 |
tctgaatatacaacattaagcagctcctttgatctacttgctgaacttgaactgaatgcacttcttggttgctttcccaacaagcaagtaccacagactg |
8318231 |
T |
|
| Q |
101 |
tgttaggtatctcaattttaggtactcccataatcatattcttatcaaccaattgattaagacctctaaaattgagatgaccaaacctatagtgccataa |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8318232 |
tgttaggtatctcaattttaggaactcccagaatcatttctttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataa |
8318331 |
T |
|
| Q |
201 |
cca |
203 |
Q |
| |
|
||| |
|
|
| T |
8318332 |
cca |
8318334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 27570359 - 27570562
Alignment:
| Q |
1 |
tctgaatatacaacattaagcagctcctttgatctacttgctgcagttgaactgaatgcacttctgggttgctttcccaacaagcaagtatcacaaactg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
27570359 |
tctgaatatacaacattaagcagctcctttgatctacttgctgaacttgaactgaatgcacttctaggttgcttccccaacaagcaagtatcacaaactg |
27570458 |
T |
|
| Q |
101 |
tgttaggtatct-caattttaggtactcccataatcatattcttatcaaccaattgattaagacctctaaaattgagatgaccaaacctatagtgccata |
199 |
Q |
| |
|
|||||||||||| || ||||||| ||||||| |||||| | ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
27570459 |
tgttaggtatctccatttttaggcactcccaaaatcatttctttatcaaccaatttattaagacctctaaaattgagatgaccaaatctatagtgccata |
27570558 |
T |
|
| Q |
200 |
acca |
203 |
Q |
| |
|
|||| |
|
|
| T |
27570559 |
acca |
27570562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 17889256 - 17889463
Alignment:
| Q |
1 |
tctgaatatacaacattaagcagctcctttgatctacttgctgcagttgaactgaatgcacttctgggttgctttcccaacaagcaagtatcacaaactg |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
17889256 |
tctgaatatacaacattaagtagctcctttgatctacttgctgaacttgaactgaatgcacttctaggttgcttccccaacaagcaagtatcacaaactg |
17889355 |
T |
|
| Q |
101 |
tgttaggtatctcaattttaggtactcccataatcatattcttatcaaccaattgattaagacctctaaaattgagatgacc--aaacctatagtgccat |
198 |
Q |
| |
|
||| |||||||||||||||||| |||| || |||||| | ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
17889356 |
tgtcaggtatctcaattttaggcactctcagaatcatttatttatcaaccaattgattaagacctctaaaattgagatgaccaaaaatctatagtgccat |
17889455 |
T |
|
| Q |
199 |
aaccagct |
206 |
Q |
| |
|
|||||||| |
|
|
| T |
17889456 |
aaccagct |
17889463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 17161624 - 17161434
Alignment:
| Q |
1 |
tctgaatatacaacattaagcagctcctttgatctacttgctgcagttgaactgaatgcacttctgggttgctttcccaacaagcaagtatcacaaactg |
100 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||||||||||||| || |||||| ||||||| ||| ||||| || | |||||||||||| ||||| |||| |
|
|
| T |
17161624 |
tctgaatgcacaacattaagtagctcatttgatctacttgctccacttgaacagaatgcatgtctaggttggttgctcaacaagcaagtgtcacagactg |
17161525 |
T |
|
| Q |
101 |
tgttaggtatctcaattttaggtactcccataatcatattcttatcaaccaattgattaagacctctaaaattgagatgaccaaacctata |
191 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
17161524 |
tgttaggtatctcaattttaggaactcccagaatcatttctttatcaaccaattgattaagacctctaaaattgagatgaccaaatctata |
17161434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 31927263 - 31927465
Alignment:
| Q |
1 |
tctgaatatacaacattaagcagctcctttgatctacttgctgcagttgaactgaatgcacttctgggttgctttcccaacaagcaagtatcacaaactg |
100 |
Q |
| |
|
|||||| | |||||||| || | ||| ||||||||| | || || |||||||||||| | |||| |||||||| |||||||| ||||||| ||||| || |
|
|
| T |
31927263 |
tctgaaaacacaacattgagtaactcttttgatctattagcaacacttgaactgaatgtatttctaggttgcttgcccaacaaacaagtattacaaaatg |
31927362 |
T |
|
| Q |
101 |
tgttaggtatctcaattttaggtactcccataatcatattcttatcaaccaattgattaagacctctaaaattgagatgaccaaacctatagtgccataa |
200 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
31927363 |
tactaagtatctcaattttaggtactcccataatcatatctttgtcaactaattgattaagacctctaaaattgagatgaccaaacctataatgtcataa |
31927462 |
T |
|
| Q |
201 |
cca |
203 |
Q |
| |
|
||| |
|
|
| T |
31927463 |
cca |
31927465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 49 - 204
Target Start/End: Complemental strand, 23255525 - 23255370
Alignment:
| Q |
49 |
gaactgaatgcacttctgggttgctttcccaacaagcaagtatcacaaactgtgttaggtatctcaattttaggtactcccataatcatattcttatcaa |
148 |
Q |
| |
|
|||||||||||| ||| ||||| || || | ||||||||||||||| ||| ||| ||||||||||| |||||||||||| | |||||||| ||||||| |
|
|
| T |
23255525 |
gaactgaatgcagatctaggttgtttaccaatcaagcaagtatcacagactttgtcaggtatctcaaatttaggtactcctagaatcatatatttatcaa |
23255426 |
T |
|
| Q |
149 |
ccaattgattaagacctctaaaattgagatgaccaaacctatagtgccataaccag |
204 |
Q |
| |
|
|||||||||||| || ||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
23255425 |
ccaattgattaacactcctaaaattgagatcaccaaatttatagtgccataaccag |
23255370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 87 - 201
Target Start/End: Original strand, 15500899 - 15501013
Alignment:
| Q |
87 |
agtatcacaaactgtgttaggtatctcaattttaggtactcccataatcatattcttatcaaccaattgattaagacctctaaaattgagatgaccaaac |
186 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||| || | || ||| | |||||||| |||||||||| |||||||||||| |||||||||||| |
|
|
| T |
15500899 |
agtatcataaactgtactaggtatctcaattttaggtacaccaagaaccatttctttatcaactaattgattaaaacctctaaaattaagatgaccaaac |
15500998 |
T |
|
| Q |
187 |
ctatagtgccataac |
201 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
15500999 |
ctatagtgccataac |
15501013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 159; Significance: 8e-85; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 8052921 - 8052719
Alignment:
| Q |
1 |
tctgaatatacaacattaagcagctcctttgatctacttgctgcagttgaactgaatgcacttctgggttgctttcccaacaagcaagtatcacaaactg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||| |||| |||| |
|
|
| T |
8052921 |
tctgaatatacaacattaagcagctcctttgatctacttgctgaacttgaactgaatgcacttcttggttgctttcccaacaagcaagtaccacagactg |
8052822 |
T |
|
| Q |
101 |
tgttaggtatctcaattttaggtactcccataatcatattcttatcaaccaattgattaagacctctaaaattgagatgaccaaacctatagtgccataa |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8052821 |
tgttaggtatctcaattttaggaactcccagaatcatttctttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataa |
8052722 |
T |
|
| Q |
201 |
cca |
203 |
Q |
| |
|
||| |
|
|
| T |
8052721 |
cca |
8052719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 36672580 - 36672378
Alignment:
| Q |
1 |
tctgaatatacaacattaagcagctcctttgatctacttgctgcagttgaactgaatgcacttctgggttgctttcccaacaagcaagtatcacaaactg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||| |||| |||| |
|
|
| T |
36672580 |
tctgaatatacaacattaagcagctcctttgatctacttgctgaacttgaactgaatgcacttcttggttgctttcccaacaagcaagtaccacagactg |
36672481 |
T |
|
| Q |
101 |
tgttaggtatctcaattttaggtactcccataatcatattcttatcaaccaattgattaagacctctaaaattgagatgaccaaacctatagtgccataa |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
36672480 |
tgttaggtatctcaattttaggaactcccagaatcatttctttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataa |
36672381 |
T |
|
| Q |
201 |
cca |
203 |
Q |
| |
|
||| |
|
|
| T |
36672380 |
cca |
36672378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 35953060 - 35953260
Alignment:
| Q |
1 |
tctgaatatacaacattaagcagctcctttgatctacttgctgcagttgaactgaatgcacttctgggttgctttcccaacaagcaagtatcacaaactg |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||| | |||||||| |||||||||||| | |||||||||| |
|
|
| T |
35953060 |
tctgaatatagaacattaagcagctcctttgatctacttgctgcacttgaactgaattcacttataggttgcttgcccaacaagcaaatgtcacaaactg |
35953159 |
T |
|
| Q |
101 |
tgttaggtatctcaattttaggtactcccataatcatattcttatcaaccaattgattaagacctctaaaattgagatgaccaaacctatagtgccataa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
35953160 |
tgttaggtatctcaattttaggtactcccagaatcatttctttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataa |
35953259 |
T |
|
| Q |
201 |
c |
201 |
Q |
| |
|
| |
|
|
| T |
35953260 |
c |
35953260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 159; Significance: 8e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 26313542 - 26313340
Alignment:
| Q |
1 |
tctgaatatacaacattaagcagctcctttgatctacttgctgcagttgaactgaatgcacttctgggttgctttcccaacaagcaagtatcacaaactg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||| |||| |||| |
|
|
| T |
26313542 |
tctgaatatacaacattaagcagctcctttgatctacttgctgaacttgaactgaatgcacttcttggttgctttcccaacaagcaagtaccacagactg |
26313443 |
T |
|
| Q |
101 |
tgttaggtatctcaattttaggtactcccataatcatattcttatcaaccaattgattaagacctctaaaattgagatgaccaaacctatagtgccataa |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
26313442 |
tgttaggtatctcaattttaggaactcccagaatcatttctttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataa |
26313343 |
T |
|
| Q |
201 |
cca |
203 |
Q |
| |
|
||| |
|
|
| T |
26313342 |
cca |
26313340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 39795924 - 39795722
Alignment:
| Q |
1 |
tctgaatatacaacattaagcagctcctttgatctacttgctgcagttgaactgaatgcacttctgggttgctttcccaacaagcaagtatcacaaactg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||| |||| |||| |
|
|
| T |
39795924 |
tctgaatatacaacattaagcagctcctttgatctacttgctgaacttgaactgaatgcacttcttggttgctttcccaacaagcaagtaccacagactg |
39795825 |
T |
|
| Q |
101 |
tgttaggtatctcaattttaggtactcccataatcatattcttatcaaccaattgattaagacctctaaaattgagatgaccaaacctatagtgccataa |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
39795824 |
tgttaggtatctcaattttaggaactcccagaatcatttctttatcaaccaattgattaagacctctaaaattgagatgaccaaatctatagtgccataa |
39795725 |
T |
|
| Q |
201 |
cca |
203 |
Q |
| |
|
||| |
|
|
| T |
39795724 |
cca |
39795722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University