View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8517_high_14 (Length: 218)
Name: NF8517_high_14
Description: NF8517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8517_high_14 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 3 - 218
Target Start/End: Original strand, 28240014 - 28240230
Alignment:
| Q |
3 |
tacatggagtctctacatcatgtgtgacccaataaatccaccatatggcccaataagctgacgtcaagactaaaagcaatagctattgaatttgcagacc |
102 |
Q |
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| T |
28240014 |
tacatggagtctctacatcatgtgtgacccaataaatccaccatatggcccaataagctgacgtcaagactaaaagcaatagctattgaatttgcagacc |
28240113 |
T |
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| Q |
103 |
taactcaaac-aaaaaatgctatacttgaactaaaatacctatttaaatctagtttaatattcagagaaatcccaacaactaaacatagggcatatttag |
201 |
Q |
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| T |
28240114 |
taactcaaacaaaaaaatgctatacttgaactaaaatacctatttaaatctagtttaatattcagagaaatcccaacaactaaacatagggcatatttag |
28240213 |
T |
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| Q |
202 |
ataaacaacttatctgc |
218 |
Q |
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| T |
28240214 |
ataaacaacttatctgc |
28240230 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 99
Target Start/End: Complemental strand, 21501397 - 21501321
Alignment:
| Q |
25 |
tgtgacccaataaatcca--ccatatggcccaataagctgacgtcaag-actaaaagcaatagctattgaatttgcag |
99 |
Q |
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| T |
21501397 |
tgtgacccaatcaaaccaagccatgtggcccaataagctgac-tcaaggactaaaagcaatagattttgaatttgcag |
21501321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 32847567 - 32847620
Alignment:
| Q |
47 |
atggcccaataagctgacgt-caagactaaaagcaatagctattgaatttgcag |
99 |
Q |
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| T |
32847567 |
atggcccaataagctgacgtccgagactaaaatcaatagtttttgaatttgcag |
32847620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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