View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8517_high_2 (Length: 497)
Name: NF8517_high_2
Description: NF8517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8517_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 451; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 1 - 487
Target Start/End: Original strand, 25822101 - 25822587
Alignment:
| Q |
1 |
gcagcatcatctcctgtaggaggaaccatgtggcagactccgactcggattcatactacagtccctacacttcagatgtcgagcaacagattgaaagctg |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25822101 |
gcagcatcatctcctgcaggaggaaccatgtggcagactccgactcggattcatactacagtccctacacttcagatgtcgagcaacagattgaaagctg |
25822200 |
T |
|
| Q |
101 |
cattaaatgctagagataatactgatctaaacatgaaatttctcgaaaatcatcatatgccaaagctaataatagaagagtcaaataggcttgcaggagt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
25822201 |
cattaaatgctagagataatactgatctaaacatgaaatttctcgaaaatcgtcatatgccgaagctaataatagaagagtcaaatagacttgcaggagt |
25822300 |
T |
|
| Q |
201 |
gaatcctactagccatgaagacattttcgggtcatcgatacaatcttcgaaagacatgctggtgcatcaaaatgtgaagcaagaactgtgtggctaccct |
300 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
25822301 |
gaatcctactaaccatgaagacatttttgggtcatcgatacaatcttcgaaagacatgctggtgcatcaaaatgtgaaccaagaactgtgtggctaccct |
25822400 |
T |
|
| Q |
301 |
tctgaccttaccaatacaaatgtgattggatcaccagaattcagaggtagtccatttgtgaattcaagatatgatgccttttcgaagcggagccagagct |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
25822401 |
tctgaccttaccaatacaaatgtgattggatcaccagaattcagaggtagtccatttgtgaattcaagatatgatgccttttcaaatcggagccagagct |
25822500 |
T |
|
| Q |
401 |
ttttcgagtgcagcagcgtggcaagctttaattccaagcttccttctgctacctcagttgcattagaaccttctactgccttctctg |
487 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25822501 |
ttttcgagtgcagcagcgtggcaagctttaattccaagcttccttctgctacctcagttgcattagaaccttctactgccttctctg |
25822587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 6 - 487
Target Start/End: Original strand, 25816319 - 25816788
Alignment:
| Q |
6 |
atcatctcctgtaggaggaaccatgtggcagactccgactcggattcatactacagtccctacacttcagatgtcgagcaacagattgaaagctgcatta |
105 |
Q |
| |
|
||||| ||||| |||| |||||||||||| ||||||||||| |||| ||||||||||||||||| ||||||| |||||||||| ||||| |
|
|
| T |
25816319 |
atcatatcctgcaggaagaaccatgtggccgactccgactcaaattcgtactacagtccctacacctcagatgccgagcaacagcttgaa---------- |
25816408 |
T |
|
| Q |
106 |
aatgctagagataatactgatctaaacatgaaatttctcgaaaatcatcatatgccaaagctaataatagaagagtcaaataggcttgcaggagtgaatc |
205 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||| ||||| |||| |||||||||| ||||| || |||| ||||| ||||||||| |||||||||| |
|
|
| T |
25816409 |
--tgctagagataatactcatctggacatgaaatttttcgaatatcacaatatgccaaatctaatgatggaagggtcaagtaggcttgctggagtgaatc |
25816506 |
T |
|
| Q |
206 |
ctactagccatgaagacattttcgggtcatcgatacaatcttcgaaagacatgctggtgcatcaaaatgtgaagcaagaactgtgtggctacccttctga |
305 |
Q |
| |
|
|||||| || ||||| | ||| |||||||||||||||||| ||| || |||| || | |||| |||||||| ||| |||| | || |||||| | |
|
|
| T |
25816507 |
ctactaaccttgaaggctattttgggtcatcgatacaatctccgacagcaatgcaggggtatcagaatgtgaaccaacaacttcagagatatccttctca |
25816606 |
T |
|
| Q |
306 |
ccttaccaatacaaatgtgattggatcaccagaattcagaggtagtccatttgtgaattcaagatatgatgccttttcgaagcggagccagagctttttc |
405 |
Q |
| |
|
||||||||| | |||||| || |||||| | | ||||| | |||| || |||||||||||||||||||| ||||||||| |||||||| |||| || |
|
|
| T |
25816607 |
acttaccaattctaatgtggttagatcacaacagttcaggttttatccaattttgaattcaagatatgatgccctttcgaagcagagccagaactttatc |
25816706 |
T |
|
| Q |
406 |
gagtgcagcagcgtggcaagctttaattccaagcttccttctgctacctcagttgcattagaaccttctactgccttctctg |
487 |
Q |
| |
|
||| |||||||| |||| ||||||||||||| |||||| ||||||||||||| |||| || ||||| ||| ||||||||| |
|
|
| T |
25816707 |
gagagcagcagcatggcgagctttaattccatgcttccagatgctacctcagttacattggagccttcaacttccttctctg |
25816788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 181 - 246
Target Start/End: Original strand, 25813235 - 25813300
Alignment:
| Q |
181 |
tcaaataggcttgcaggagtgaatcctactagccatgaagacattttcgggtcatcgatacaatct |
246 |
Q |
| |
|
||||||||||||||| ||||||||||||||| || |||| || ||||||||||||||||||||||| |
|
|
| T |
25813235 |
tcaaataggcttgcaagagtgaatcctactaaccttgaaaactttttcgggtcatcgatacaatct |
25813300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 25818906 - 25818959
Alignment:
| Q |
181 |
tcaaataggcttgcaggagtgaatcctactagccatgaagacattttcgggtca |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||| || ||||||||||| |
|
|
| T |
25818906 |
tcaaataggcttgcaggagtgaatcctactaaccttgaaaactttttcgggtca |
25818959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 25813091 - 25813165
Alignment:
| Q |
22 |
ggaaccatgtggcagactccgactcggattcatactacagtccctacacttcagatgtcgagcaacagattgaaa |
96 |
Q |
| |
|
||||||||||||||||||| || || | ||||| || ||||||| || ||||||||| |||| |||||||||||| |
|
|
| T |
25813091 |
ggaaccatgtggcagactcagattcagcttcatgctgcagtcccaacccttcagatgccgagaaacagattgaaa |
25813165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 461
Target Start/End: Original strand, 25813403 - 25813491
Alignment:
| Q |
373 |
gatgccttttcgaagcggagccagagctttttcgagtgcagcagcgtggcaagctttaattccaagcttccttctgctacctcagttgc |
461 |
Q |
| |
|
|||||||| || |||| |||||||||||| ||||| ||| ||| |||| ||||||| ||| | ||||||||||||||||||||||| |
|
|
| T |
25813403 |
gatgccttctcaaagcaaagccagagctttatcgagcgcactagcatggcgagctttagttctgatcttccttctgctacctcagttgc |
25813491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 412
Target Start/End: Original strand, 25819073 - 25819113
Alignment:
| Q |
372 |
tgatgccttttcgaagcggagccagagctttttcgagtgca |
412 |
Q |
| |
|
|||||||||||||||||||||||| |||||| | ||||||| |
|
|
| T |
25819073 |
tgatgccttttcgaagcggagccatagctttattgagtgca |
25819113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 372 - 474
Target Start/End: Original strand, 33648607 - 33648709
Alignment:
| Q |
372 |
tgatgccttttcgaagcggagccagagctttttcgagtgcagcagcgtggcaagctttaattccaagcttccttctgctacctcagttgcattagaacct |
471 |
Q |
| |
|
|||||||||||||||||| ||||| |||||| | |||||||||||| |||| || ||||||||| ||||||||||||||| ||||||||| | |||||| |
|
|
| T |
33648607 |
tgatgccttttcgaagcgtagccaaagctttattgagtgcagcagcatggcgagatttaattccgagcttccttctgctagctcagttgccatggaacct |
33648706 |
T |
|
| Q |
472 |
tct |
474 |
Q |
| |
|
||| |
|
|
| T |
33648707 |
tct |
33648709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 372 - 476
Target Start/End: Complemental strand, 36224621 - 36224517
Alignment:
| Q |
372 |
tgatgccttttcgaagcggagccagagctttttcgagtgcagcagcgtggcaagctttaattccaagcttccttctgctacctcagttgcattagaacct |
471 |
Q |
| |
|
|||||||||||| |||||||| || |||||| | ||| |||||| ||| |||||| |||||||| ||||||||||||||| ||||||||| | |||||| |
|
|
| T |
36224621 |
tgatgccttttcaaagcggagacaaagctttattgagcgcagcaacgttgcaagccttaattccgagcttccttctgctagctcagttgccatggaacct |
36224522 |
T |
|
| Q |
472 |
tctac |
476 |
Q |
| |
|
||||| |
|
|
| T |
36224521 |
tctac |
36224517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 181 - 246
Target Start/End: Original strand, 33648440 - 33648505
Alignment:
| Q |
181 |
tcaaataggcttgcaggagtgaatcctactagccatgaagacattttcgggtcatcgatacaatct |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||| ||||||| |||||||| ||||||||| |
|
|
| T |
33648440 |
tcaaataggcttgcaggagtgaatcctactaaccttgaaaacatttttgggtcatcaatacaatct |
33648505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 102
Target Start/End: Original strand, 33648293 - 33648373
Alignment:
| Q |
22 |
ggaaccatgtggcagactccgactcggattcatactacagtccctacacttcagatgtcgagcaacagattgaaagctgca |
102 |
Q |
| |
|
||||||||||||||||||| || || | ||||| || |||||||||| ||||||||| |||| | |||||| ||| ||||| |
|
|
| T |
33648293 |
ggaaccatgtggcagactcagattcagcttcatgctgcagtccctacccttcagatgccgagaagcagatttaaaactgca |
33648373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University