View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8517_high_7 (Length: 273)
Name: NF8517_high_7
Description: NF8517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8517_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 53952341 - 53952578
Alignment:
| Q |
1 |
caaaaacttagactagtgtttatatcataaaaagtcaaagtaaaccctcctgattgctctatgtgtgctaacagtgctgtatggtccaatttttatataa |
100 |
Q |
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| T |
53952341 |
caaaaacttagactagtgtttatatcataaaaagtcaaagtaaaccctcctgattgctccatgtgtgctaacagtgctgtatggtccaatttttatataa |
53952440 |
T |
|
| Q |
101 |
agccacactacatttagttgagtatcgtggactttgattttcgtaattagttatcacccttggtaattacaacttggagaatattctccatctgtctgtt |
200 |
Q |
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| T |
53952441 |
aaccacactacatttagttgagtgtcgtggactttgattttcgtaattagttatcacccttggtaattacaacttggagaatattctccatctgtctgtt |
53952540 |
T |
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| Q |
201 |
gtaaagttcagggttaatttggacaaataataaagtat |
238 |
Q |
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|||||||| ||||||||||||||||||||||||||||| |
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| T |
53952541 |
gtaaagttgagggttaatttggacaaataataaagtat |
53952578 |
T |
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