View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8517_low_1 (Length: 579)
Name: NF8517_low_1
Description: NF8517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8517_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 13 - 565
Target Start/End: Complemental strand, 5994916 - 5994365
Alignment:
| Q |
13 |
gacatcacaatggacgnnnnnnncattttctagatcacttaaggaatcaaagagcttctgtccaaggtcgtcttggatgtcggctatacatactttagca |
112 |
Q |
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| T |
5994916 |
gacatcacaatggacgaaaaaaacattttctagatcacttaaggaatcaaagagcttctgtccaaggtcgtcttggatgtcggctatacatactttagca |
5994817 |
T |
|
| Q |
113 |
ccgtgggtgtggaataggcgaacgatgctttctccaattccggaggctccaccagttaccacagcgactttacctaataatctgagggagatataaagca |
212 |
Q |
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| T |
5994816 |
ccgtgggtgtggaataggcgaacgatgctttctccaattccggaggctccaccagttaccacagcgactttacctaataatctgagggagatataaagca |
5994717 |
T |
|
| Q |
213 |
gagaactttaactcaaatgattgaaatattgagagtggttaacaataattgaaaacttaaagaaaacattattattatagaatgtgtcattgtgtgacag |
312 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5994716 |
gagaactttagctcaaatgattgaaatattgagagtggttaacaataattgaaaacttaaagaaaacattattattatagaatgtgtcattgtgtgacag |
5994617 |
T |
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| Q |
313 |
ataaacatgaccaaaaccagaatccataattcagaaatcagtgatatggaaagaaaacagctaaatatttctagatctttttctacttgtaaaagacagt |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
5994616 |
ataaacatgaccaaaaccagaatccataattcagaaatcagtgatatggaaagaaaacagctaaatatttctagatctttttc-acttgtaaaagacagt |
5994518 |
T |
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| Q |
413 |
gttttcccataatcttttgtcttaaccctccggttcccatggcaaagggaccatgttaatcatgaatttggtcaaaagtaagtaaattctagctaaggat |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5994517 |
gttttcccataatcttttgtcttaaccctccggttcccatgggaaagggaccctgttaatcatgaatttggtcaaaagtaagtaaattctagctaaggat |
5994418 |
T |
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| Q |
513 |
tgttccagtcagagtctaaacttagatactcccgatcgattcaaccttcatta |
565 |
Q |
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||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5994417 |
tgttctagtcagagtctaaacttaaatactcccgatcgattcaaccttcatta |
5994365 |
T |
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