View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8517_low_12 (Length: 259)

Name: NF8517_low_12
Description: NF8517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8517_low_12
NF8517_low_12
[»] chr1 (4 HSPs)
chr1 (109-258)||(47567742-47567891)
chr1 (189-223)||(40179887-40179921)
chr1 (20-53)||(47567653-47567686)
chr1 (189-225)||(27542693-27542729)
[»] chr2 (1 HSPs)
chr2 (184-224)||(4931603-4931643)
[»] chr8 (1 HSPs)
chr8 (185-223)||(16850678-16850716)
[»] chr4 (1 HSPs)
chr4 (184-223)||(1048167-1048206)
[»] chr5 (1 HSPs)
chr5 (186-223)||(29037065-29037102)
[»] chr7 (1 HSPs)
chr7 (188-224)||(32910657-32910693)


Alignment Details
Target: chr1 (Bit Score: 146; Significance: 5e-77; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 109 - 258
Target Start/End: Original strand, 47567742 - 47567891
Alignment:
Q  109 tatctttggcctcttcatgtgccacgtccaaattggaccaagcacagttttcgtttttacgtatatttaaaaacgtttgaatcaaatacatttgactttt 208  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47567742 tatctttggcctcttcatgtgccaagtccaaattggaccaagcacagttttcgtttttacgtatatttaaaaacgtttgaatcaaatacatttgactttt 47567841  T
Q  209 tgcttatatttaagattggcatgagtagtgaattaactaatggttcatct 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47567842 tgcttatatttaagattggcatgagtagtgaattaactaatggttcatct 47567891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 223
Target Start/End: Original strand, 40179887 - 40179921
Alignment:
Q  189 atcaaatacatttgactttttgcttatatttaaga 223  Q
    |||||||||||||||||||||||||||||||||||    
T  40179887 atcaaatacatttgactttttgcttatatttaaga 40179921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 47567653 - 47567686
Alignment:
Q  20 cttaaaactcttttgtcatggctttcctccattt 53  Q
    ||||||||||||||||||||||||||||||||||    
T  47567653 cttaaaactcttttgtcatggctttcctccattt 47567686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 225
Target Start/End: Original strand, 27542693 - 27542729
Alignment:
Q  189 atcaaatacatttgactttttgcttatatttaagatt 225  Q
    |||||||||||||||||||||  ||||||||||||||    
T  27542693 atcaaatacatttgactttttatttatatttaagatt 27542729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 4931603 - 4931643
Alignment:
Q  184 tttgaatcaaatacatttgactttttgcttatatttaagat 224  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  4931603 tttgaatcaaatacatttgactttttgtttatatttaagat 4931643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 223
Target Start/End: Original strand, 16850678 - 16850716
Alignment:
Q  185 ttgaatcaaatacatttgactttttgcttatatttaaga 223  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  16850678 ttgaaccaaatacatttgactttttgcttatatttaaga 16850716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 223
Target Start/End: Complemental strand, 1048206 - 1048167
Alignment:
Q  184 tttgaatcaaatacatttgactttttgcttatatttaaga 223  Q
    |||||||||||| || ||||||||||||||||||||||||    
T  1048206 tttgaatcaaatgcaattgactttttgcttatatttaaga 1048167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 29037102 - 29037065
Alignment:
Q  186 tgaatcaaatacatttgactttttgcttatatttaaga 223  Q
    |||| |||||||||||||||||||||||||| ||||||    
T  29037102 tgaaccaaatacatttgactttttgcttatacttaaga 29037065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 32910657 - 32910693
Alignment:
Q  188 aatcaaatacatttgactttttgcttatatttaagat 224  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  32910657 aatcaaatatatttgactttttgattatatttaagat 32910693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University