View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8517_low_13 (Length: 256)
Name: NF8517_low_13
Description: NF8517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8517_low_13 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 15 - 256
Target Start/End: Complemental strand, 50407826 - 50407585
Alignment:
| Q |
15 |
acatcaaaggctatcaataagtgaccgacacaggataaaaacataatcaatgtgaacatgagtggtcgtggaaatttgtactttgttaaaacatgttcag |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50407826 |
acatcaaaggctatcaataagtgaccgacacaggataaaaacataatcaatgtgaacatgagtggtcgtggaaatttgtactttgttaaaacatgttcag |
50407727 |
T |
|
| Q |
115 |
aaacaaaaccagaaaaaactcttcctagataattccaaatactcactaatgaaacaaatgtgcttatgcttgtttttgggtatccgagtgaggttccaat |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
50407726 |
aaacaaaaccagaaaaaactcttcctagataattccaaatactcactaatgaaacaaatgtgcttatgcttgtttttgggtatccaagtgaggttccaat |
50407627 |
T |
|
| Q |
215 |
ttgacctaaattatcaattgctgttaaagttccaccaacacc |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50407626 |
ttgacctaaattatcaattgctgttaaagttccaccaacacc |
50407585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 84 - 256
Target Start/End: Complemental strand, 50385728 - 50385556
Alignment:
| Q |
84 |
ggaaatttgtactttgttaaaacatgttcagaaacaaaaccagaaaaaactcttcctagataattccaaatactcactaatgaaacaaatgtgcttatgc |
183 |
Q |
| |
|
|||||| |||||||||||| || ||||||||||||||| || || ||||| | |||||||||||||||||| || ||||| || ||||| |||||||||| |
|
|
| T |
50385728 |
ggaaatctgtactttgttagaaaatgttcagaaacaaatcctgagaaaacacgtcctagataattccaaatgcttactaaagacacaaaagtgcttatgc |
50385629 |
T |
|
| Q |
184 |
ttgtttttgggtatccgagtgaggttccaatttgacctaaattatcaattgctgttaaagttccaccaacacc |
256 |
Q |
| |
|
|| | ||||| |||| ||||| ||||| || ||||| | ||||||||||||||| |||||||| |||||||| |
|
|
| T |
50385628 |
ttttctttggatatcttagtgatgttcctatctgaccaagattatcaattgctgtcaaagttcctccaacacc |
50385556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 84 - 256
Target Start/End: Complemental strand, 50394147 - 50393975
Alignment:
| Q |
84 |
ggaaatttgtactttgttaaaacatgttcagaaacaaaaccagaaaaaactcttcctagataattccaaatactcactaatgaaacaaatgtgcttatgc |
183 |
Q |
| |
|
|||||| |||||||||||| || ||||||||||||||| || || ||||| | |||||||||||||||||| || ||||| || ||||| |||||||||| |
|
|
| T |
50394147 |
ggaaatctgtactttgttagaaaatgttcagaaacaaatcctgagaaaacacgtcctagataattccaaatgcttactaaagacacaaaagtgcttatgc |
50394048 |
T |
|
| Q |
184 |
ttgtttttgggtatccgagtgaggttccaatttgacctaaattatcaattgctgttaaagttccaccaacacc |
256 |
Q |
| |
|
|| | ||||| |||| ||||| ||||| || ||||| | ||||||||||||||| |||||||| |||||||| |
|
|
| T |
50394047 |
ttttctttggatatcttagtgatgttcctatctgaccaagattatcaattgctgtcaaagttcctccaacacc |
50393975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 84 - 252
Target Start/End: Complemental strand, 50390873 - 50390705
Alignment:
| Q |
84 |
ggaaatttgtactttgttaaaacatgttcagaaacaaaaccagaaaaaactcttcctagataattccaaatactcactaatgaaacaaatgtgcttatgc |
183 |
Q |
| |
|
|||||| |||||||||||| || ||||||||||||||| || || ||||| | |||||||||||||||||| || ||||| || ||||| |||||||||| |
|
|
| T |
50390873 |
ggaaatctgtactttgttagaaaatgttcagaaacaaatcctgagaaaacacgtcctagataattccaaatgcttactaaagacacaaaagtgcttatgc |
50390774 |
T |
|
| Q |
184 |
ttgtttttgggtatccgagtgaggttccaatttgacctaaattatcaattgctgttaaagttccaccaa |
252 |
Q |
| |
|
|| | ||||| |||| ||||| ||||| || ||||| | |||||||| |||||| || | |||||||| |
|
|
| T |
50390773 |
ttttctttggatatcttagtgatgttcctatctgaccaagattatcaactgctgtcaatgatccaccaa |
50390705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University