View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8517_low_14 (Length: 252)
Name: NF8517_low_14
Description: NF8517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8517_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 4e-87; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 28833823 - 28834046
Alignment:
| Q |
13 |
aacctgtgaatggtatattatgtgggaacaaaactgcaaatgaaggcactgcatttggaacaattggacataaagtgctgatggatatccaattagcaac |
112 |
Q |
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| T |
28833823 |
aacctgggaatggtatgttatgtggaaacaagactgcaaaagaaggcgctgcatttggaacaattggacaaaaagtgctaatggatatccaattagcaac |
28833922 |
T |
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| Q |
113 |
acctaaaattaaaggnnnnnnngcagctactaagacacacgtgacacctggtggaaatatttcaatttatgccattgcacagtgtgctgaaacagtcact |
212 |
Q |
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| T |
28833923 |
acctaaaattaaaggtttttttgcagctactaagacacaagtgacacctggtggaaatagttcaatttatgccattgcacagtgtgctgaaacagtcact |
28834022 |
T |
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| Q |
213 |
gaaagtggttgtttagattgtttg |
236 |
Q |
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| T |
28834023 |
gaaagtggttgtttagattgtttg |
28834046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 20 - 236
Target Start/End: Original strand, 28824951 - 28825167
Alignment:
| Q |
20 |
gaatggtatattatgtgggaacaaaactgcaaatgaaggcactgcatttggaacaattggacataaagtgctgatggatatccaattagcaacacctaaa |
119 |
Q |
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| T |
28824951 |
gaatggtgtaatatgtgggaacaaaactgcaaaagaaggcactgcatttggaacaattggacacaaagtgctaatggatatccaattagcaacacctaaa |
28825050 |
T |
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| Q |
120 |
attaaaggnnnnnnngcagctactaagacacacgtgacacctggtggaaatatttcaatttatgccattgcacagtgtgctgaaacagtcactgaaagtg |
219 |
Q |
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| T |
28825051 |
atcaaaggtttttttgcagctaccaagacacaggtgacacctggtggaaatagttcagtttatgccgttgcacagtgtgctgaaacagtcactgaaagtg |
28825150 |
T |
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| Q |
220 |
gttgtttagattgtttg |
236 |
Q |
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| T |
28825151 |
gttgtttagcttgtttg |
28825167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 28818283 - 28818340
Alignment:
| Q |
175 |
caatttatgccattgcacagtgtgctgaaacagtcactgaaagtggttgtttagattg |
232 |
Q |
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| T |
28818283 |
caatctatgctattgcacaatgtgctgaaacagtcactcaaagtggctgtttagattg |
28818340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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