View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8517_low_15 (Length: 240)
Name: NF8517_low_15
Description: NF8517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8517_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 37 - 217
Target Start/End: Complemental strand, 23399750 - 23399568
Alignment:
| Q |
37 |
cctctccaattcatacaataatattccaaatacaaataaatttaaacaaattaacgagtatttcttccnnnnnnnnnnn--caaattaacgagtaattga |
134 |
Q |
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| T |
23399750 |
cctctccaattcatacaataatattccaaatacaaataaatttaaacaaattaacgagtatttcttcaaaaaaaaaaaaaacaaattaacgagtaattga |
23399651 |
T |
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| Q |
135 |
tttcttagaacatttggacgtaagagaggaactcaactgtctttgtaagtatcgttttccttacgcgcgaattcaagcaccct |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
23399650 |
tttcttagaacatttggacgtaagagaggaactcaactgtctttgtaagtatcattttccttacgcgcgaattcaagcaccct |
23399568 |
T |
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