View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8517_low_5 (Length: 403)
Name: NF8517_low_5
Description: NF8517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8517_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 242921 - 242536
Alignment:
| Q |
1 |
tgctccttttcctgttcttagccaaaatgcctttgtaagtagacatatataaaataaaactatgaatttaagggagaaaagtgatgaacaaactacctga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
242921 |
tgctccttttcctgttcttagccaaaatgcctttgtaagtagacatatataaaataaaactatgaatttgagggagaaaagtgatcaacaaactacctga |
242822 |
T |
|
| Q |
101 |
gataaggacagtaagacaaagaccaattgcgatgaatacataaccaaatgaggtgattgcggcaatggttgatatccatgtcagtttgtgaaagttggga |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
242821 |
gataaggacagtaagacaaagaccaattgcaatgaatacataaccaaacgaggtgatagcggcaatggttgagatccatgtcagtttgtgaaagttggga |
242722 |
T |
|
| Q |
201 |
atttgagacaagaaaatctgcaatatcccaaaaccgatcatgtagggattagaagtactgctacaatcagcttcaagtccttttctatggacgcaaacaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
242721 |
atttgagacaagaaaatctgcaatatcccaaaaccgatcatgtagggattagaagtactgctacaatcagcttcaagtccttttctatggacgcaaacaa |
242622 |
T |
|
| Q |
301 |
ctttcggtatttctctgccatattacacttgttggtaagcatatattgacaattataaaattagataaagatcataatacaaatac |
386 |
Q |
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| T |
242621 |
ctttcggtatttctctgccatattacacttgttggtaagcatatattgacaattataaaattagataaagatcataatacaaatac |
242536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 74 - 386
Target Start/End: Original strand, 222544 - 222856
Alignment:
| Q |
74 |
gagaaaagtgatgaacaaactacctgagataaggacagtaagacaaagaccaattgcgatgaatacataaccaaatgaggtgattgcggcaatggttgat |
173 |
Q |
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|||||||||||| |||||| |||| ||||||||||||||||||||||| |||| ||| ||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
222544 |
gagaaaagtgatcaacaaattacccgagataaggacagtaagacaaaggccaactgcaatgaatacataaccaaacgaggtgatagcggcaatggttgat |
222643 |
T |
|
| Q |
174 |
atccatgtcagtttgtgaaagttgggaatttgagacaagaaaatctgcaatatcccaaaaccgatcatgtagggattagaagtactgctacaatcagctt |
273 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| | |||| |||||||||| |
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| T |
222644 |
atccatgtcagtttgtgaaagttgggaatttgagacaagaaaatctgcaatatcccaaaaccgatcatatagggattataagaagtgctgcaatcagctt |
222743 |
T |
|
| Q |
274 |
caagtccttttctatggacgcaaacaactttcggtatttctctgccatattacacttgttggtaagcatatattgacaattataaaattagataaagatc |
373 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||| |||| |||||||||||||| ||| |
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| T |
222744 |
caagtccttttctatggacgcaaacaactttgtttatttctctgccatattacacttgttagtaaggatatattgaaaattttaaaattagataaacatc |
222843 |
T |
|
| Q |
374 |
ataatacaaatac |
386 |
Q |
| |
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| ||||||||||| |
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| T |
222844 |
aaaatacaaatac |
222856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 222350 - 222399
Alignment:
| Q |
5 |
ccttttcctgttcttagccaaaatgcctttgtaagtagacatatataaaa |
54 |
Q |
| |
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|||||||||| ||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
222350 |
ccttttcctgctcttagccaaaatgcatttgtaagtagacatatataaaa |
222399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 94 - 292
Target Start/End: Original strand, 12030365 - 12030563
Alignment:
| Q |
94 |
tacctgagataaggacagtaagacaaagaccaattgcgatgaatacataaccaaatgaggtgattgcggcaatggttgatatccatgtcagtttgtgaaa |
193 |
Q |
| |
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|||||||||||| || ||| ||||||| ||||||| ||||||||||||||||| ||||| ||||| |||| |||||| |||||||||| || ||||| |
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| T |
12030365 |
tacctgagataataacgttaaaacaaagagcaattgcaatgaatacataaccaaacgaggtaattgcagcaacggttgaaatccatgtcaattcatgaaa |
12030464 |
T |
|
| Q |
194 |
gttgggaatttgagacaagaaaatctgcaatatcccaaaaccgatcatgtagggattagaagtactgctacaatcagcttcaagtccttttctatggac |
292 |
Q |
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||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||| ||| || |||||||||||| |||||||||||||||| |
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| T |
12030465 |
gtttggaatttgagacaagaaaatctgcaatgtcccaaaactaatcatgtagggattataagaactactgcaatcagcttcatgtccttttctatggac |
12030563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 139 - 251
Target Start/End: Complemental strand, 51529445 - 51529333
Alignment:
| Q |
139 |
cataaccaaatgaggtgattgcggcaatggttgatatccatgtcagtttgtgaaagttgggaatttgagacaagaaaatctgcaatatcccaaaaccgat |
238 |
Q |
| |
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|||||||||| ||||| || || |||| ||||||||| |||| | || || || || || ||||||||||| |||||||| || ||||||||||||| |
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| T |
51529445 |
cataaccaaaagaggtaatagcagcaacagttgatatcaatgttaacttatggaaatttgggatttgagacaataaaatctgaaagatcccaaaaccgag |
51529346 |
T |
|
| Q |
239 |
catgtagggatta |
251 |
Q |
| |
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||||||||||||| |
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|
| T |
51529345 |
catgtagggatta |
51529333 |
T |
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