View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8517_low_7 (Length: 314)
Name: NF8517_low_7
Description: NF8517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8517_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 17 - 305
Target Start/End: Complemental strand, 4365177 - 4364889
Alignment:
| Q |
17 |
aatacaagaaactcatttcacaacagacaacaacaattctgctgtaaagaaagacaagaaatgggagaagattcacacgtcatcggtcactcataaccac |
116 |
Q |
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| T |
4365177 |
aatacaagaaactcatttcacaacagacaacaacaattctgctgtaaagaaagacaagaaatgggagaagattcacacgtcatcggtcactcataaccac |
4365078 |
T |
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| Q |
117 |
gatgctgattcaactagagtaccggtgtttgtgatgttgccattagacacggtaacaatgggaggaaaattgaataaagcaagggcaatgaatgctagtt |
216 |
Q |
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| T |
4365077 |
gatggtgattcgaatagagtaccggtgtttgtgatgttgccattagacacggtaacaatgggaggaaaattgaataaagcaagagcaatgaatgctagtt |
4364978 |
T |
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| Q |
217 |
tgatggctttgaagagtgctggtgttgaaggagtaatggttgatgcttggtggggtttggtcgaaaaagatggtccaatgaagtataat |
305 |
Q |
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| T |
4364977 |
tgatggctttgaagagtgctggtgttgaaggagtaatggttgatgcttggtggggtttggtcgaaaaagatggtccaatgaagtataat |
4364889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 21 - 305
Target Start/End: Complemental strand, 4372766 - 4372482
Alignment:
| Q |
21 |
caagaaactcatttcacaacagacaacaacaattctgctgtaaagaaagacaagaaatgggagaagattcacacgtcatcggtcactcataaccacgatg |
120 |
Q |
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| T |
4372766 |
caagaaacacatttcacaaaggaaaacaccaactctgcagttaaggaaaacaagaaaagggagaaggttctcgcgccatcgattgctcataaccacgatg |
4372667 |
T |
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| Q |
121 |
ctgattcaactagagtaccggtgtttgtgatgttgccattagacacggtaacaatgggaggaaaattgaataaagcaagggcaatgaatgctagtttgat |
220 |
Q |
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| T |
4372666 |
ctgattcaactagagtaccggtgtttgtgatgttgccattagacacggtaacaatgggaggaaaattgaataaagcaagagcaatgaatgctagtttgat |
4372567 |
T |
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| Q |
221 |
ggctttgaagagtgctggtgttgaaggagtaatggttgatgcttggtggggtttggtcgaaaaagatggtccaatgaagtataat |
305 |
Q |
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| T |
4372566 |
ggctttgaagagtgctggtgttgaaggagtaatggttgatgcttggtggggtttggtcgaaaaagatggtccaatgaagtataat |
4372482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 135 - 289
Target Start/End: Original strand, 41042491 - 41042645
Alignment:
| Q |
135 |
gtaccggtgtttgtgatgttgccattagacacggtaacaatgggaggaaaattgaataaagcaagggcaatgaatgctagtttgatggctttgaagagtg |
234 |
Q |
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||||| || ||||||||| | ||||| || || ||||||||||||||||| ||||| || |||| ||||||||||||||||||||||||||||| |||| |
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| T |
41042491 |
gtaccagtttttgtgatgcttccattggatacagtaacaatgggaggaaacttgaacaagccaagagcaatgaatgctagtttgatggctttgaaaagtg |
41042590 |
T |
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| Q |
235 |
ctggtgttgaaggagtaatggttgatgcttggtggggtttggtcgaaaaagatgg |
289 |
Q |
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| T |
41042591 |
ctggagttgaaggggtgatggttgatgtttggtggggtttggttgaaaaagatgg |
41042645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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