View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8517_low_9 (Length: 293)
Name: NF8517_low_9
Description: NF8517
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8517_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 22603295 - 22603569
Alignment:
| Q |
1 |
tccctatcaatgtaccnnnnnnngttgacaaaaagtttttcttcactgttggattaggaacatttccttgtccaaaaaacacaacatgtcaaggtccaaa |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
22603295 |
tccctatcaatgtaccaaaaaaagttgacaaaaagtttttcttcactgttggattaggaacatttccttgtccaaaaaactcaacatgtcaaggtccaaa |
22603394 |
T |
|
| Q |
101 |
taacaacacaaaatttgcagcctcagtgaacaatttctcatttgttcttccatcagtttctattatccaagcatactattttggaaaatcaaattcaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
22603395 |
taacaacacaaaatttgcagcctcagtgaacaatttctcatttgttcttccatcagtttctattatgcaagcatactattttggaaaatcaaattcaaat |
22603494 |
T |
|
| Q |
201 |
ggagtgtacaaaactgattttcccgaaacaccgttgaaccctttcaattacaccggaacttcgccgaataacaca |
275 |
Q |
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|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
22603495 |
ggagtgtataaaactgattttcccgaaacaccattgaaccctttcaattacaccggaacttcgccgaataacaca |
22603569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 144
Target Start/End: Complemental strand, 24069356 - 24069237
Alignment:
| Q |
25 |
ttgacaaaaagtttttcttcactgttggattaggaacatttccttgtccaaaaaacacaacatgtcaaggtccaaataacaacacaaaatttgcagcctc |
124 |
Q |
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|||||||||| |||||||| | |||||| ||||||| ||| || ||||||||| |||||||||||| |||||||| | ||||||||||||| || |
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| T |
24069356 |
ttgacaaaaactttttctttatcgttggactaggaactagtccatgcccaaaaaaccaaacatgtcaaggaccaaataatagttcaaaatttgcagcttc |
24069257 |
T |
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| Q |
125 |
agtgaacaatttctcatttg |
144 |
Q |
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| |||||||| | ||||||| |
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| T |
24069256 |
aatgaacaatgtatcatttg |
24069237 |
T |
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