View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8518A_high_11 (Length: 427)
Name: NF8518A_high_11
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_high_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 22 - 423
Target Start/End: Complemental strand, 33995811 - 33995410
Alignment:
| Q |
22 |
catgtatattccatgccgtaactctttaatttcctgtcacacgaacctctatataaacccgttttataactccaaccaaagcataacaaactccctaaga |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33995811 |
catgtatattccatgccgtaactctttaatttcctgtcacacgaacctctatataaacccgttttataactccaaccaaagcataacaaactccctaaga |
33995712 |
T |
|
| Q |
122 |
gacaagaatcatctaagacaatatggccttcaccacaaacattgttcatgtcctcaccttattactagttataataagcgcttcaatgtttacagttact |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33995711 |
gacaagaatcatctaagacaatatggccttcaccacaaacattgttcatgtcctcaccttattactagttataataagcgcttcaatgtttacagttact |
33995612 |
T |
|
| Q |
222 |
gtggcaaacaaagactggccctcctttggcaatttcaactacactgattggtggtccagatttggaaaccatcatcatcaaataaataagactgaacaac |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33995611 |
gtggcaaacaaagactggccctcctttggcaatttcaactacactgattggtggtccagatttggaaaccatcatcatcaaataaataagacagaacaac |
33995512 |
T |
|
| Q |
322 |
aacctaagaagatcattgttggtggctctcaaaattggcattttggctataactattcagattgggctatcaagaatggtcctttttacgtctatgatac |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33995511 |
aacctaagaagatcattgttggtggctctcaaaattggcattttggctataactattcagattgggctatcaagaatggtcctttttacgtcaatgatac |
33995412 |
T |
|
| Q |
422 |
tc |
423 |
Q |
| |
|
|| |
|
|
| T |
33995411 |
tc |
33995410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 116 - 423
Target Start/End: Complemental strand, 34008300 - 34007993
Alignment:
| Q |
116 |
ctaagagacaagaatcatctaagacaatatggccttcaccacaaacattgttcatgtcctcaccttattactagttataataagcgcttcaatgtttaca |
215 |
Q |
| |
|
||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
34008300 |
ctaagtgacaagaatcatataaaacaatatggccttcaccacaaacattgttcatgtcctcaccttattactagttataataaccacttcaatgtttaca |
34008201 |
T |
|
| Q |
216 |
gttactgtggcaaacaaagactggccctcctttggcaatttcaactacactgattggtggtccagatttggaaaccatcatcatcaaataaataagactg |
315 |
Q |
| |
|
|||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34008200 |
gttactatggcaaacaaagattggccctcttttggcaatttcaactacactgattggtggtccagatttggaaaccatcatcatcaaataaataagactg |
34008101 |
T |
|
| Q |
316 |
aacaacaacctaagaagatcattgttggtggctctcaaaattggcattttggctataactattcagattgggctatcaagaatggtcctttttacgtcta |
415 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||| |||||||||||||||||| || | |
|
|
| T |
34008100 |
aacaacaacctaagaacatcattgttggtggctctcaaaattggcactttggctataactactctgattgggctattaagaatggtcctttttacctcaa |
34008001 |
T |
|
| Q |
416 |
tgatactc |
423 |
Q |
| |
|
|||||||| |
|
|
| T |
34008000 |
tgatactc |
34007993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 144 - 421
Target Start/End: Complemental strand, 34000379 - 34000105
Alignment:
| Q |
144 |
atggccttcaccacaaacattgttcatgtcctcaccttattactagttataataagcgcttcaatgtttacagttactgtggcaaacaaagactggccct |
243 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34000379 |
atggcctccaccaccaacattgttcatgtcctcacctta---ctagtaataataaccgcttcaatgtttacagttactgttgcaaacaaagactggccct |
34000283 |
T |
|
| Q |
244 |
cctttggcaatttcaactacactgattggtggtccagatttggaaaccatcatcatcaaataaataagactgaacaacaacctaagaagatcattgttgg |
343 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
34000282 |
cttttggcaatttcaactatactgattggtggtccagatttggaaaccatcatcgtcaaataaataagacagaacaacaacctaagaagatcattgttgg |
34000183 |
T |
|
| Q |
344 |
tggctctcaaaattggcattttggctataactattcagattgggctatcaagaatggtcctttttacgtctatgatac |
421 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
34000182 |
tggctctcaaaattggcactttggctataactactctgattgggctatcaagaatggtcctttttacctcaatgatac |
34000105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 202 - 423
Target Start/End: Complemental strand, 34003749 - 34003528
Alignment:
| Q |
202 |
cttcaatgtttacagttactgtggcaaacaaagactggccctcctttggcaatttcaactacactgattggtggtccagatttggaaaccatcatcatca |
301 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
34003749 |
cttcaatgtttacggttactatggcaaacaaagactggccctcttttggcaattttaactacactgattggtggtccagatttggaaatcatcatcatca |
34003650 |
T |
|
| Q |
302 |
aataaataagactgaacaacaacctaagaagatcattgttggtggctctcaaaattggcattttggctataactattcagattgggctatcaagaatggt |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
34003649 |
aataaataagactgaacaacaacctaagaacatcattgttggtggctctcaaaattggcactttggctataactactctgattgggctatcaagaatggt |
34003550 |
T |
|
| Q |
402 |
cctttttacgtctatgatactc |
423 |
Q |
| |
|
||||||||| || ||||||||| |
|
|
| T |
34003549 |
cctttttacctcaatgatactc |
34003528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 324 - 423
Target Start/End: Complemental strand, 33993476 - 33993377
Alignment:
| Q |
324 |
cctaagaagatcattgttggtggctctcaaaattggcattttggctataactattcagattgggctatcaagaatggtcctttttacgtctatgatactc |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| ||||| |||||||||||||||||| || | ||||||| |
|
|
| T |
33993476 |
cctaagaagatcattgttggtggctctcaaaattggcactttggctacaactattctgattgagctattaagaatggtcctttttacctcaacgatactc |
33993377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University