View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_high_13 (Length: 382)
Name: NF8518A_high_13
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_high_13 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 17 - 360
Target Start/End: Complemental strand, 11696174 - 11695831
Alignment:
| Q |
17 |
gaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttccagcccaaatattcacattttcagcagcttttgcagtgctttgtttgagtggtc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11696174 |
gaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttccagcccaaatattcacattttcagcagcttttgcagtgctttgtttgagtggtc |
11696075 |
T |
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| Q |
117 |
ctgttagatatgatatcaaattcccttgaattccataatatgatgccctctctgccatttccacacctaaatataacattcacaattcattctcaatctt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11696074 |
ctgttagatatgatatcaaattcccttgaattccataatatgatgccctctctgccatttccacacctaaatataacattcacaattcattctcaatctc |
11695975 |
T |
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| Q |
217 |
atttgataaaaataaataaaactaaagatgtattttcaagtctgttagaagttataatctctgctgttctaaattagtccattttaagaatggactaatc |
316 |
Q |
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|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
11695974 |
atttcataaaaataaataaaactaaacatgtattttcaagtctgttagaagttataatctctgctgttctaaattagtccattttaagaatggactaacc |
11695875 |
T |
|
| Q |
317 |
cagtaccgcagagataacaaaattgtgtgtttttaagtacctat |
360 |
Q |
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||| ||||||||||||||||| |||||||||| ||||||||||| |
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| T |
11695874 |
cagaaccgcagagataacaaatttgtgtgtttgtaagtacctat |
11695831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 11798015 - 11797825
Alignment:
| Q |
17 |
gaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttccagcccaaatattcacattttcagcagcttttgcagtgctttgtttgagtggtc |
116 |
Q |
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| T |
11798015 |
gaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttccaacccaaacattcacattttcagcagcttttgcagtgctttgtttgagtggtc |
11797916 |
T |
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| Q |
117 |
ctgttagatatgatatcaaattcccttgaattccataatatgatgccctctctgccatttccacacctaaatataacattcacaattcatt |
207 |
Q |
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| T |
11797915 |
ctgttagatatgatatcaaattcccttgaattccataatatgataccctctctgccacttccacacctaaacataacattcataattcatt |
11797825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 11701971 - 11701781
Alignment:
| Q |
17 |
gaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttccagcccaaatattcacattttcagcagcttttgcagtgctttgtttgagtggtc |
116 |
Q |
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|||||||||| |||||||| |||||||||||||||||||| ||||||||||||| ||| ||||| | ||||||| |||||||||| ||||||||||| | |
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| T |
11701971 |
gaatcagcaacaaaagcacctaagagaggaagtagagaagctgttccagcccaaacatttacattcttagcagctgttgcagtgctctgtttgagtggcc |
11701872 |
T |
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| Q |
117 |
ctgttagatatgatatcaaattcccttgaattccataatatgatgccctctctgccatttccacacctaaatataacattcacaattcatt |
207 |
Q |
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| T |
11701871 |
ctgttagatatgatatcaaattcccttgaattccataatatgataccctctctgccacttccacacctaaacataacattcataatccatt |
11701781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 11676078 - 11675888
Alignment:
| Q |
17 |
gaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttccagcccaaatattcacattttcagcagcttttgcagtgctttgtttgagtggtc |
116 |
Q |
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|||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
11676078 |
gaatcagcaacaaaagcaccaaagagaggaaggagagaagcaactccagcccaaatattcacattctcagcagcagttgcagtgctttgtttgagtggtc |
11675979 |
T |
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| Q |
117 |
ctgttagatatgatatcaaattcccttgaattccataatatgatgccctctctgccatttccacacctaaatataacattcacaattcatt |
207 |
Q |
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||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||| ||||||||||| | | |||||||| || ||||| |
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| T |
11675978 |
ctgttagatatgatatcaagttcccttgaatcccataatatgataccctctctgccacttccacacctatacaaaacattcataactcatt |
11675888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 11684357 - 11684167
Alignment:
| Q |
17 |
gaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttccagcccaaatattcacattttcagcagcttttgcagtgctttgtttgagtggtc |
116 |
Q |
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|||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
11684357 |
gaatcagcaacaaaagcaccaaagagaggaaggagagaagcaactccagcccaaatattcacattctcagcagcagttgcagtgctttgtttgagtggtc |
11684258 |
T |
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| Q |
117 |
ctgttagatatgatatcaaattcccttgaattccataatatgatgccctctctgccatttccacacctaaatataacattcacaattcatt |
207 |
Q |
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||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||| ||||||||||| | | |||||||| || ||||| |
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| T |
11684257 |
ctgttagatatgatatcaagttcccttgaatcccataatatgataccctctctgccacttccacacctatacaaaacattcataactcatt |
11684167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 17 - 203
Target Start/End: Complemental strand, 11779153 - 11778968
Alignment:
| Q |
17 |
gaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttccagcccaaatattcacattttcagcagcttttgcagtgctttgtttgagtggtc |
116 |
Q |
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|||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||| | |||||| |||||||||||||||||||||| | |
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| T |
11779153 |
gaatcagcaatgaatgcaccaaagagaggaaggagagaagcagttccagcccaaacattcacattcttagcagcagttgcagtgctttgtttgagtggcc |
11779054 |
T |
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| Q |
117 |
ctgttagatatgatatcaaattcccttgaattccataatatgatgccctctctgccatttccacacctaaatataacattcacaatt |
203 |
Q |
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| T |
11779053 |
ctgttagatatgatatcaagtttcccttaaccccaaaatatgacatcctctctgccacctccacacctaaat-taacattcacaatt |
11778968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 16616 - 16426
Alignment:
| Q |
17 |
gaatcagcaatgaaagcaccaaagagaggaagtagagaagcagttccagcccaaatattcacattttcagcagcttttgcagtgctttgtttgagtggtc |
116 |
Q |
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|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||| |
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| T |
16616 |
gaatcagcaacgaaagcacctaagagaggaagtagagaagcagttccagcccaaatattcacattcttagcagctgttgcagtgctttgtttgagtggtc |
16517 |
T |
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| Q |
117 |
ctgttagatatgatatcaaattcccttgaattccataatatgatgccctctctgccatttccacacctaaatataacattcacaattcatt |
207 |
Q |
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||||||||||||||||||| || || | ||| ||| ||||||| ||||||||| | ||||||||||||| |||||||||| ||| |||| |
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| T |
16516 |
ctgttagatatgatatcaagtttcccttaatcccaatatatgatatcctctctgctacttccacacctaaacataacattcataatccatt |
16426 |
T |
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