View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_high_15 (Length: 368)
Name: NF8518A_high_15
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 13 - 362
Target Start/End: Original strand, 11412823 - 11413172
Alignment:
| Q |
13 |
tgaagaaaaggataacaaagtgaaaatagtatggaatacctttctatctagcacaattttggtatgttctttcatcgattttgtggagcagaggtagatg |
112 |
Q |
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| T |
11412823 |
tgaagaaaaggataacaaaatgaaaatagtatgaaatatctttctatctagcacaattttggtatgttctttcatcgattttgtggagcagaggtagatg |
11412922 |
T |
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| Q |
113 |
acgaaggccatgatgcttgaattgataaaaacgtgagtaatgcttgaaaactccataaaacaaaatgaccaatttttcgattttgttcctctgatacaaa |
212 |
Q |
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| T |
11412923 |
acaaaggctatgatgcttgaattgataaaaacgtgggtaatgcttgaaaactccataaaacaaaatgacccatttttcgattttgttcctctgatacaaa |
11413022 |
T |
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| Q |
213 |
aactgctgactgtggccgaatatgatttttattccatgtgactgatgataagtggaaaaactatctaatgaattttaccaagaatgttcgttaattaatg |
312 |
Q |
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| T |
11413023 |
aactactaactctgacataatatgatttttattccatgtgactgatgataagtggaaaaactatctaatgaattttaccaagaatgttcgttaattaatg |
11413122 |
T |
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| Q |
313 |
ttattattactcatgtaatgtgttaatcaagtttcaactatattatattt |
362 |
Q |
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| T |
11413123 |
ttattattacttatgtaatctcttaatcaagtttcaactatattatattt |
11413172 |
T |
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Back To:
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Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 295 - 362
Target Start/End: Original strand, 34875102 - 34875169
Alignment:
| Q |
295 |
aatgttcgttaattaatgttattattactcatgtaatgtgttaatcaagtttcaactatattatattt |
362 |
Q |
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| T |
34875102 |
aatgttcgttaattaatgttattattactcatgtaatgttgtaatgaaatttcaattatatcatattt |
34875169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 321
Target Start/End: Original strand, 20807390 - 20807418
Alignment:
| Q |
293 |
agaatgttcgttaattaatgttattatta |
321 |
Q |
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| T |
20807390 |
agaatgttcgttaattaatgttattatta |
20807418 |
T |
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