View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_high_19 (Length: 337)
Name: NF8518A_high_19
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 6 - 336
Target Start/End: Complemental strand, 30316046 - 30315715
Alignment:
| Q |
6 |
agtagcatagatgagtattatgagnnnnnnn-tagtagcaagagaggtggcacaaaacttattcttgattaatttattcatagtacaaaaggtggaactc |
104 |
Q |
| |
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|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30316046 |
agtagcatagatgagtattatgagaaaaaaaatagtagtaagagaggtggcacaaaacttattcttgattaatttattcatagtacaaaaggtggaactc |
30315947 |
T |
|
| Q |
105 |
tagttatagttacaagataatgacgttttattctttgctcactatgagctatagttccttacagcatacatgcataatatttgatcactcattaaaaagc |
204 |
Q |
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|||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
30315946 |
tagttacaattacaagataatgccgttttattctttgctcactatgagctatagttccttacagcatacatgcataacatttgatcactcattaaaaagc |
30315847 |
T |
|
| Q |
205 |
tcccaaaattgaagaaataggctccctttttctctggcttcgaccttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctga |
304 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30315846 |
tcccaaaattgaagaaataggctccctttgtctctggcttcgaccttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctga |
30315747 |
T |
|
| Q |
305 |
ttctttagtagcctctcaacatcttgagctga |
336 |
Q |
| |
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||||||||||| |||||||||||||||||||| |
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| T |
30315746 |
ttctttagtagactctcaacatcttgagctga |
30315715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 37 - 336
Target Start/End: Complemental strand, 30305147 - 30304849
Alignment:
| Q |
37 |
tagtagcaagagaggtggcacaaaacttattcttgattaatttattcatagtacaaaaggtggaactctagttatagttacaagataatgacgttttatt |
136 |
Q |
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||||||||||||||||||| |||||||||||||||||| | |||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30305147 |
tagtagcaagagaggtggctcaaaacttattcttgattcagttattcatagtagaaa-ggtggaactctagttatagttacaagataatgccgttttatt |
30305049 |
T |
|
| Q |
137 |
ctttgctcactatgagctatagttccttacagcatacatgcataatatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttttc |
236 |
Q |
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| | ||||| ||| |||||||| ||| || | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
30305048 |
catcgctcattattagctatagctccatatatcatacttgcataatatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttgtc |
30304949 |
T |
|
| Q |
237 |
tctggcttcgaccttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagcctctcaacatcttgagctga |
336 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
30304948 |
tctggcttcgaccttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaacatcttgagctga |
30304849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 48 - 336
Target Start/End: Complemental strand, 30287462 - 30287181
Alignment:
| Q |
48 |
gaggtggcacaaaacttattcttgattaatttattcatagtacaaaaggtggaactctagttatagttacaagataatgacgttttattctttgctcact |
147 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||| |||||||||| ||||||||||||| |||| | |
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| T |
30287462 |
gaggaggcacaaaacttattcttgattaatttattcatagtagaaa-ggaggaactctagtta------caagataatgccgttttattcttttctcatt |
30287370 |
T |
|
| Q |
148 |
atgagctatagttccttacagcatacatgcataatatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttttctctggcttcga |
247 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
30287369 |
atgagctatagttccttacagcatacatgcataacatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttgtctctggcttcga |
30287270 |
T |
|
| Q |
248 |
ccttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagcctctcaacatcttgagctga |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
30287269 |
ccttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaacatcttgagctga |
30287181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 37 - 336
Target Start/End: Complemental strand, 30300349 - 30300057
Alignment:
| Q |
37 |
tagtagcaagagaggtggcacaaaacttattcttgattaatttattcatagtacaaaaggtggaactctagttatagttacaagataatgacgttttatt |
136 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||| || ||||||| || ||||||||| |
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| T |
30300349 |
tagtagtaagagaggtggcacaaaacttattcttgattaatttattcatggtggaaa-ggtggaactctagata------caagatattgccgttttatt |
30300257 |
T |
|
| Q |
137 |
ctttgctcactatgagctatagttccttacagcatacatgcataatatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttttc |
236 |
Q |
| |
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|| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||| || |
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| T |
30300256 |
ctctgctcactatgagctatgactccttacagcatacaagcataatatttgatcactcattaaaatactcccaaaattgaagatataagctccctttgtc |
30300157 |
T |
|
| Q |
237 |
tctggcttcgaccttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagcctctcaacatcttgagctga |
336 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
30300156 |
tctggcttcgaccttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaacatcttgagctga |
30300057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 48 - 336
Target Start/End: Complemental strand, 30292485 - 30292215
Alignment:
| Q |
48 |
gaggtggcacaaaacttattcttgattaatttattcatagtacaaaaggtggaactctagttatagttacaagataatgacgttttattctttgctcact |
147 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||| |||||||||| ||||||||| |
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| T |
30292485 |
gaggtggcacaaaacttgttcttgattaatttattcatagtaggaaag-tggaactctagttatagttacaagctaatgccgttttattcattgctcact |
30292387 |
T |
|
| Q |
148 |
atgagctatagttccttacagcatacatgcataatatttgatcactcattaaaaagctcccaaaattgaagaaataggctccctttttctctggcttcga |
247 |
Q |
| |
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||||||| || |||||||| |||||||| |||||||| | |||| |||||||||||||||||||||||||||||||||||||| |
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| T |
30292386 |
atgagct---------tagagcatacaagcataataag--------cattaaaacgttcccgaaattgaagaaataggctccctttttctctggcttcga |
30292304 |
T |
|
| Q |
248 |
ccttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagcctctcaacatcttgagctga |
336 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
30292303 |
ccttcttccctttccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagactctcaacatcttgagctga |
30292215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 260 - 329
Target Start/End: Complemental strand, 46810582 - 46810513
Alignment:
| Q |
260 |
tccctttgttgaggctgagcatttgcaaagtaagattgtctctgattctttagtagcctctcaacatctt |
329 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||| || ||||||| |||||| ||||| |||| |
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| T |
46810582 |
tccctttgttgaggttgagcatttgcaaagtaagattgtctttggttctttattagcctatcaacctctt |
46810513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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