View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8518A_high_32 (Length: 269)
Name: NF8518A_high_32
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_high_32 |
 | |
|
| [»] chr7 (6 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 30287179 - 30286911
Alignment:
| Q |
1 |
ccagggaatgctacctctttcactggtctctctatttggcttatcacattgtcctcctcaccttcaaatttccaatcacacaaaaaataaacatatctta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30287179 |
ccagggaatgctacctctttcactggtctctctatttggcttatcacattgtcctcctcaccttcaaatttccaatcacacaaaaaataaacatatctta |
30287080 |
T |
|
| Q |
101 |
attagctttttcttattcaattaagtagaagcaaatcttttaattaatgttaacatgtcattnnnnnnnnnnnnttactaacatatgctacattcaattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
30287079 |
attagctttttcttattcaattaagtagaagcaaatcttttaattaatgttaacatgtcattaaaaataaaaaattactaacatatgctacattcaattt |
30286980 |
T |
|
| Q |
201 |
aatttaattttggtaggaaactattgtaattaggccatacagaaagagactgagtgagaatacagtata |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30286979 |
aatttaattttggtaggaaactattgtaattaggccatacagaaagagactgagtgagaatacagtata |
30286911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 30292213 - 30291945
Alignment:
| Q |
1 |
ccagggaatgctacctctttcactggtctctctatttggcttatcacattgtcctcctcaccttcaaatttccaatcacacaaaaaataaacatatctta |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30292213 |
ccagggaatgctagctctttcactggtctctgaatttggcttatcacattgtcctcctcaccttcaaatttccaatcacacaaaaaataaacatatctta |
30292114 |
T |
|
| Q |
101 |
attagctttttcttattcaattaagtagaagcaaatcttttaattaatgttaacatgtcattnnnnnnnnnnnnttactaacatatgctacattcaattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
30292113 |
attagctttttcttattcaattaagtagaagcaaatcttttaattaatgttaacatgtcattaaaaataaaaaattactaacatatgctacattcaattt |
30292014 |
T |
|
| Q |
201 |
aatttaattttggtaggaaactattgtaattaggccatacagaaagagactgagtgagaatacagtata |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30292013 |
aatttaattttggtaggaaactattgtaattaggccatacagaaagagactgagtgagaatacagtata |
30291945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 30304847 - 30304579
Alignment:
| Q |
1 |
ccagggaatgctacctctttcactggtctctctatttggcttatcacattgtcctcctcaccttcaaatttccaatcacacaaaaaataaacatatctta |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30304847 |
ccagggaatgctagctctttcactggtctctgaatttggcttatcacattgtcctcctcaccttcaaatttccaatcacacaaaaaataaacatatctta |
30304748 |
T |
|
| Q |
101 |
attagctttttcttattcaattaagtagaagcaaatcttttaattaatgttaacatgtcattnnnnnnnnnnnnttactaacatatgctacattcaattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
30304747 |
attagctttttcttattcaattaagtagaagcaaatcttttaattaatgttaacatgtcattaaaaataaaaaattactaacatatgctacattcaattt |
30304648 |
T |
|
| Q |
201 |
aatttaattttggtaggaaactattgtaattaggccatacagaaagagactgagtgagaatacagtata |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30304647 |
aatttaattttggtaggaaactattgtaattaggccatacagaaagagactgagtgagaatacagtata |
30304579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 30300055 - 30299930
Alignment:
| Q |
1 |
ccagggaatgctacctctttcactggtctctctatttggcttatcacattgtcctcctcaccttcaaatttccaatcacacaaaaaataaacatatctta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
30300055 |
ccagggaatgctacctctttcactggtctctctatttggcttatcacattgtcttcctcaccttcaaatttgaaatcacaca-aaaataaacatatctta |
30299957 |
T |
|
| Q |
101 |
attagctttttcttattcaattaagta |
127 |
Q |
| |
|
||||| |||| || ||||| ||||||| |
|
|
| T |
30299956 |
attagattttactcattcatttaagta |
30299930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 116 - 269
Target Start/End: Complemental strand, 30315651 - 30315494
Alignment:
| Q |
116 |
ttcaattaagtagaagcaaatcttttaattaatgttaacatgtcattnnnnnnnnnnnnttactaacatatgctacattcaatttaatttaattttggta |
215 |
Q |
| |
|
||||||||||||||| ||||| |||||| |||||||||||||||||| | ||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
30315651 |
ttcaattaagtagaaccaaatattttaaataatgttaacatgtcattaaaaataaaaaataactaatataggctacattcaatttaatttaattttggta |
30315552 |
T |
|
| Q |
216 |
ggaaactattgtaattaggccataca----gaaagagactgagtgagaatacagtata |
269 |
Q |
| |
|
| |||||||||||||||||||||||| ||||||||| ||||||||||| |||||| |
|
|
| T |
30315551 |
gaaaactattgtaattaggccatacagaaggaaagagaccgagtgagaatatagtata |
30315494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 30315713 - 30315647
Alignment:
| Q |
1 |
ccagggaatgctacctctttcactggtctctctatttggcttatcacattgtcctcctcaccttcaa |
67 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30315713 |
ccagggaatgctacctctttcactggtctctctatttggcttatcacattgtcttcctcaccttcaa |
30315647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 46810504 - 46810441
Alignment:
| Q |
1 |
ccagggaatgctacctctttcactggtctctctatttggcttatcacattgtcctcctcacctt |
64 |
Q |
| |
|
||||||||||| |||||||| ||||| || |||||||| |||||||||||||| |||||||||| |
|
|
| T |
46810504 |
ccagggaatgcaacctcttttactggcctttctatttgacttatcacattgtcatcctcacctt |
46810441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University