View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_high_38 (Length: 229)
Name: NF8518A_high_38
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_high_38 |
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Alignment Details
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 61 - 225
Target Start/End: Original strand, 8430187 - 8430361
Alignment:
| Q |
61 |
aaaggaactctaaaattgatttgcgtgactgtatgagatgtacctccatttcttccttgtaagagtaaagaaccatggatactcctcag----------t |
150 |
Q |
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| T |
8430187 |
aaaggaactctaaaattgatttgcgtgactgtatgagatgtacctccatttcttccttgtaagagtaaagaaccatggatactcctcagttcaagtgcct |
8430286 |
T |
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| Q |
151 |
tttacaaccattgtttaaaaacagttttctctacatggttgtaaggcactcaacacttatcaatttggtacattt |
225 |
Q |
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| T |
8430287 |
tttacaaccattgtttaaaaacagttttctctacatggttgtaaggcactcaacacttatcaatttggtacattt |
8430361 |
T |
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Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 8430081 - 8430143
Alignment:
| Q |
1 |
aggagcttattgtgaagcgtcatcctcgactaggtccttgatcaatgatcctagcgcaccaaa |
63 |
Q |
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| T |
8430081 |
aggagcttattgtgaagcgtcatcctcgactaggtccttgatcaatgatcctagcgcaccaaa |
8430143 |
T |
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