View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8518A_low_102 (Length: 337)

Name: NF8518A_low_102
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8518A_low_102
NF8518A_low_102
[»] chr6 (25 HSPs)
chr6 (1-331)||(4564418-4564748)
chr6 (1-260)||(4592938-4593199)
chr6 (1-235)||(4617729-4617963)
chr6 (9-235)||(4602504-4602730)
chr6 (158-235)||(4506718-4506795)
chr6 (153-235)||(3172597-3172679)
chr6 (6-235)||(4517030-4517259)
chr6 (147-235)||(4481543-4481631)
chr6 (158-235)||(4514315-4514392)
chr6 (163-235)||(4489555-4489627)
chr6 (162-235)||(4461988-4462061)
chr6 (146-235)||(4470652-4470741)
chr6 (146-237)||(4557974-4558065)
chr6 (146-233)||(4586485-4586572)
chr6 (155-237)||(4571830-4571912)
chr6 (146-231)||(4561353-4561438)
chr6 (146-231)||(4575157-4575242)
chr6 (198-234)||(4266358-4266394)
chr6 (4-55)||(4299195-4299246)
chr6 (146-237)||(4612910-4613001)
chr6 (158-235)||(4484033-4484111)
chr6 (171-237)||(4580915-4580981)
chr6 (6-55)||(4568753-4568802)
chr6 (157-229)||(4259354-4259426)
chr6 (155-211)||(4599028-4599084)
[»] scaffold0199 (1 HSPs)
scaffold0199 (13-235)||(183-405)
[»] chr8 (4 HSPs)
chr8 (13-235)||(1674946-1675168)
chr8 (167-235)||(20863037-20863105)
chr8 (4-55)||(20863217-20863268)
chr8 (171-233)||(16685482-16685544)
[»] chr3 (1 HSPs)
chr3 (1-230)||(1281821-1282050)
[»] chr5 (1 HSPs)
chr5 (198-233)||(24103903-24103938)
[»] scaffold0288 (1 HSPs)
scaffold0288 (147-229)||(2918-3000)


Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-166; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 4564418 - 4564748
Alignment:
Q  1 aggagagagcatttattacatcactctcaagttcattgaaagtattcaaaacaattgtagcgtctccaggaactttatcagccgcatcaattacaaagtc 100  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  4564418 aggagagagcatttattacatcactctaaagttcatggaaagtattcaaaacaattgtagagtctccaagaactttatcagccgcatcaattacaaagtc 4564517  T
Q  101 taacataatatcatttggatctgttgtcctgatactgtcaaagatatcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  4564518 taacataatatcatttggatctgttgtcctgatactgtcaaagatatcctttaaccgaaagtttttcaaacctggaatccaatctacattagtttccaaa 4564617  T
Q  201 tatccatttgttagatagctctcatctgcatatcaaaagtatcagttaatatcttgaaggttatacatacatccgtcaatacatgagtattttgttttcg 300  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  4564618 tatccatttgttagatagctctgatctgcatatcaaatgtatcagttaatatcttgaaggttatacatacatccgtacatacatgagtattttgttttcg 4564717  T
Q  301 acaaaaacatacatatataataaggtattat 331  Q
    |||||||||||||||||||||||||||||||    
T  4564718 acaaaaacatacatatataataaggtattat 4564748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 4592938 - 4593199
Alignment:
Q  1 aggagagagcatttattacatcactctcaagttcattgaaagtattcaaaacaattgtagcgtctccaggaactttatcagccgcatcaattacaaagtc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| || |  | || ||||||||||| |||||||||||||||     
T  4592938 aggagagagcatttattacatcactctcaagttcattgaaagtattcaaaataatagtagagtttttatgatctttatcagccacatcaattacaaagtt 4593037  T
Q  101 taacataatatcatttggatctgttgtcctgatactgtcaaagatatcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaa 200  Q
    ||||||||||||||||||||||||||||||||||  ||||   || ||||| || |||||||||||||||||||||||||||||||| ||||||||||||    
T  4593038 taacataatatcatttggatctgttgtcctgatatagtcagcaatgtccttcaaccgaaagtttttcaaacctggaatccaatctactttagtttccaaa 4593137  T
Q  201 tatccatttgttagatagctctcatctgcatatcaaaagtatc--agttaatatcttgaagg 260  Q
    ||||||||||||||||| ||||||||||||||||||||||| |  |||||||| ||||||||    
T  4593138 tatccatttgttagataactctcatctgcatatcaaaagtagcaaagttaatagcttgaagg 4593199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 4617729 - 4617963
Alignment:
Q  1 aggagagagcatttattacatcactctcaagttcattgaaagtattcaaaacaattgtagcgtctccaggaactttatcagccgcatcaattacaaagtc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||     ||||  ||| ||  | || || |  || ||    
T  4617729 aggagagagcatttattacatcactctcaagttcattgaaagtattcaaaagaatagtagtgtctttgttaactcgatctgcaacttctataaagaattc 4617828  T
Q  101 taacataatatcatttggatctgttgtcctgatactgtcaaagatatcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaa 200  Q
    |||||||||||||||||||| |||||||||||||  ||||| ||| ||||| || ||||||||||||||||| |||||||||||||| ||||||||||||    
T  4617829 taacataatatcatttggatttgttgtcctgataaagtcaacgatgtccttcaaccgaaagtttttcaaaccgggaatccaatctactttagtttccaaa 4617928  T
Q  201 tatccatttgttagatagctctcatctgcatatca 235  Q
     |||||||||||||||| |||||||||||||||||    
T  4617929 catccatttgttagataactctcatctgcatatca 4617963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 9 - 235
Target Start/End: Original strand, 4602504 - 4602730
Alignment:
Q  9 gcatttattacatcactctcaagttcattgaaagtattcaaaacaattgtagcgtctccaggaactttatcagccgcatcaattacaaagtctaacataa 108  Q
    ||||| |||||||||||||||||||||||| |||||||||||| ||| |||| ||||| |  || | |||| ||    ||||  |  || |||| |||||    
T  4602504 gcattcattacatcactctcaagttcattgtaagtattcaaaagaatagtagagtctctattaaatctatctgcaatttcaaaaaagaattctaccataa 4602603  T
Q  109 tatcatttggatctgttgtcctgatactgtcaaagatatcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatt 208  Q
    ||||||||||||||||||||||||||  |||||  || ||||| || |||||||||||||||||||||||||||||||| || ||||||||| |||||||    
T  4602604 tatcatttggatctgttgtcctgatatagtcaagaatgtccttcaaccgaaagtttttcaaacctggaatccaatctacttttgtttccaaacatccatt 4602703  T
Q  209 tgttagatagctctcatctgcatatca 235  Q
    ||||||||| || ||||||||||||||    
T  4602704 tgttagataactatcatctgcatatca 4602730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 158 - 235
Target Start/End: Original strand, 4506718 - 4506795
Alignment:
Q  158 aaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 235  Q
    ||||||| |||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||||||||||||    
T  4506718 aaagtttctcaaacctggaatccagtctaccttagtgtccaaatatccatttgttagataactctcatctgcatatca 4506795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 153 - 235
Target Start/End: Original strand, 3172597 - 3172679
Alignment:
Q  153 aatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 235  Q
    |||| |||||||||||||||||||||||| || ||  |||| ||||||||||||||||||  ||| |||||||||||||||||    
T  3172597 aatctaaagtttttcaaacctggaatccagtcaactatagtgtccaaatatccatttgtttcataactctcatctgcatatca 3172679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 6 - 235
Target Start/End: Original strand, 4517030 - 4517259
Alignment:
Q  6 agagcatttattacatcactctcaagttcattgaaagtattcaaaacaattgtagcgtctccaggaactttatcagccgcatcaattacaaagtctaaca 105  Q
    |||||||||||||||||| ||||||||||||   ||||||| |||||||| | |    || || ||||  |||| ||||| ||||| | ||| | || ||    
T  4517030 agagcatttattacatcattctcaagttcatcagaagtattgaaaacaatagaattagcttcatgaaccctatcggccgcttcaatgataaattttatca 4517129  T
Q  106 taatatcatttggatctgttgtcctgatactgtcaaagatatcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatcc 205  Q
    | |||||||| ||||| || || || |||  ||||   |  ||||||| || |||||||  ||||||||||||||| || || ||||| |||||||||||    
T  4517130 ttatatcattaggatcagtagttcttataaagtcaggcaggtcctttagtctaaagtttcccaaacctggaatccagtcaactttagtgtccaaatatcc 4517229  T
Q  206 atttgttagatagctctcatctgcatatca 235  Q
    |||||| | ||| |||||||||||||||||    
T  4517230 atttgtcaaataactctcatctgcatatca 4517259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 147 - 235
Target Start/End: Original strand, 4481543 - 4481631
Alignment:
Q  147 tcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 235  Q
    ||||| |||| |||||||||||||||||||||||| |||||  | |  ||||||||||||| ||||| ||| |||||||||||||||||    
T  4481543 tccttcaatctaaagtttttcaaacctggaatccagtctactgttgcgtccaaatatccatctgttaaataactctcatctgcatatca 4481631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 4514392 - 4514315
Alignment:
Q  158 aaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 235  Q
    |||||||  ||||||||||||||| || || ||||| ||||||||||||||||| | ||| |||||||||||||||||    
T  4514392 aaagtttcgcaaacctggaatccagtcaactttagtgtccaaatatccatttgtcaaataactctcatctgcatatca 4514315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 4489627 - 4489555
Alignment:
Q  163 ttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 235  Q
    ||||||||||||||||||| || || ||||| ||||||| ||||| ||||||||  |||||||||||||||||    
T  4489627 ttttcaaacctggaatccattcaactttagtgtccaaatttccatctgttagattactctcatctgcatatca 4489555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 235
Target Start/End: Original strand, 4461988 - 4462061
Alignment:
Q  162 tttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 235  Q
    |||||||||||||||||||| || || | ||| || |||||||||| |||||||||  ||||||||||||||||    
T  4461988 tttttcaaacctggaatccagtcaacttcagtgtctaaatatccatctgttagataaatctcatctgcatatca 4462061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 146 - 235
Target Start/End: Original strand, 4470652 - 4470741
Alignment:
Q  146 atcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 235  Q
    |||||| ||||  ||||||||||||||||||||||| || || | | | || |||||||||| | ||||||| |||||||||||||||||    
T  4470652 atccttcaatctgaagtttttcaaacctggaatccagtcaacttcaatgtcgaaatatccatctattagataactctcatctgcatatca 4470741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 237
Target Start/End: Original strand, 4557974 - 4558065
Alignment:
Q  146 atcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatcaaa 237  Q
    |||||| | ||||||||| | ||| |||||||| ||||| || ||||| ||||||||||| ||||| ||||| ||||||||| ||| |||||    
T  4557974 atccttcagtcgaaagttctgcaatcctggaatacaatccactttagtgtccaaatatccgtttgtcagataactctcatctacatgtcaaa 4558065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 233
Target Start/End: Original strand, 4586485 - 4586572
Alignment:
Q  146 atcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatat 233  Q
    |||||||| ||||||||| | ||| |||||||| || || || ||||| ||||||||||| ||||| ||||| |||| ||||||||||    
T  4586485 atcctttagtcgaaagttctccaatcctggaatacagtccactttagtgtccaaatatccgtttgtcagataactcttatctgcatat 4586572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 237
Target Start/End: Original strand, 4571830 - 4571912
Alignment:
Q  155 tcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatcaaa 237  Q
    ||||||||| ||||  ||||| || || || || ||||| ||||||||||| ||||| ||||| |||||||||||||||||||    
T  4571830 tcgaaagttcttcagtcctggcatacagtccactttagtgtccaaatatccgtttgtcagataactctcatctgcatatcaaa 4571912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 146 - 231
Target Start/End: Original strand, 4561353 - 4561438
Alignment:
Q  146 atcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcat 231  Q
    |||||| ||||  ||||||||||||||||| ||||| || || || || |||| |||| ||||||||||||  |||||||||||||    
T  4561353 atccttcaatctgaagtttttcaaacctgggatccagtcaactttcgtgtccagatattcatttgttagatcactctcatctgcat 4561438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 146 - 231
Target Start/End: Original strand, 4575157 - 4575242
Alignment:
Q  146 atcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcat 231  Q
    |||||| ||||  ||||||||||||||||| ||||| || |  || || ||||||||| ||||||||||||  |||||||||||||    
T  4575157 atccttcaatctgaagtttttcaaacctgggatccagtcaatttttgtgtccaaatattcatttgttagatcactctcatctgcat 4575242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 4266394 - 4266358
Alignment:
Q  198 aaatatccatttgttagatagctctcatctgcatatc 234  Q
    |||||||||||||||||||| ||||||||||||||||    
T  4266394 aaatatccatttgttagataactctcatctgcatatc 4266358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 4299246 - 4299195
Alignment:
Q  4 agagagcatttattacatcactctcaagttcattgaaagtattcaaaacaat 55  Q
    |||||||||| ||||||||||||||||||||||   ||||||| ||||||||    
T  4299246 agagagcattcattacatcactctcaagttcatcataagtattaaaaacaat 4299195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 146 - 237
Target Start/End: Complemental strand, 4613001 - 4612910
Alignment:
Q  146 atcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatcaaa 237  Q
    |||||| | ||||||||| | ||| ||| |||| || || || ||||| ||||||||||| ||||| ||||| ||||||||||||| |||||    
T  4613001 atccttcagtcgaaagttctgcaatccttgaatacagtccactttagtatccaaatatccgtttgtcagataactctcatctgcatgtcaaa 4612910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 4484111 - 4484033
Alignment:
Q  158 aaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttg-ttagatagctctcatctgcatatca 235  Q
    ||||||||||||| |||||| ||| ||||| | ||| ||||||||| |||||| ||||||| |||| || |||||||||    
T  4484111 aaagtttttcaaatctggaacccagtctacttcagtgtccaaatatacatttgcttagataactcttatttgcatatca 4484033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 237
Target Start/End: Original strand, 4580915 - 4580981
Alignment:
Q  171 cctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatcaaa 237  Q
    |||||||| |||||||| ||||| ||||||||||| ||||| ||||| || ||||||| | ||||||    
T  4580915 cctggaatacaatctactttagtgtccaaatatccgtttgtgagataactgtcatctgtacatcaaa 4580981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 4568753 - 4568802
Alignment:
Q  6 agagcatttattacatcactctcaagttcattgaaagtattcaaaacaat 55  Q
    ||||| |||| |||||||||||||||||||||  ||||||| ||||||||    
T  4568753 agagcctttactacatcactctcaagttcattataagtattgaaaacaat 4568802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 229
Target Start/End: Complemental strand, 4259426 - 4259354
Alignment:
Q  157 gaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgc 229  Q
    ||||||| ||||| || ||||  || ||||| || || |||| ||||||||||||||||||||||| ||||||    
T  4259426 gaaagttcttcaatccaggaacacagtctactttggtatccagatatccatttgttagatagctcttatctgc 4259354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 4599028 - 4599084
Alignment:
Q  155 tcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgt 211  Q
    ||||||||||| ||  || ||||| |||||||| ||||||||||||||||| |||||    
T  4599028 tcgaaagttttgcagtccaggaatacaatctactttagtttccaaatatccgtttgt 4599084  T

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Target: scaffold0199 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 13 - 235
Target Start/End: Original strand, 183 - 405
Alignment:
Q  13 ttattacatcactctcaagttcattgaaagtattcaaaacaattgtagcgtctccaggaactttatcagccgcatcaattacaaagtctaacataatatc 112  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| |||||   |||||||||||||  ||||||||| ||||||||||||||||||    
T  183 ttattacatcactctcaagttcattgaaagtattcaaaataattgtagagtctctgtgaactttatcagcgacatcaattaaaaagtctaacataatatc 282  T
Q  113 atttggatctgttgtcctgatactgtcaaagatatcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgtt 212  Q
    ||||||||| ||||| ||||||| |||||  | |||||| || |||||||||||||||||||||||||| || || || |||||||||||||||||||||    
T  283 atttggatccgttgttctgatacagtcaacaacatccttcaaccgaaagtttttcaaacctggaatccactcgacttttgtttccaaatatccatttgtt 382  T
Q  213 agatagctctcatctgcatatca 235  Q
    ||||  |||||||||||||||||    
T  383 agatgtctctcatctgcatatca 405  T

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Target: chr8 (Bit Score: 135; Significance: 3e-70; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 13 - 235
Target Start/End: Original strand, 1674946 - 1675168
Alignment:
Q  13 ttattacatcactctcaagttcattgaaagtattcaaaacaattgtagcgtctccaggaactttatcagccgcatcaattacaaagtctaacataatatc 112  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| |||||   |||||||||||||  ||||||||| ||||||||||||||||||    
T  1674946 ttattacatcactctcaagttcattgaaagtattcaaaataattgtagagtctctgtgaactttatcagcgacatcaattaaaaagtctaacataatatc 1675045  T
Q  113 atttggatctgttgtcctgatactgtcaaagatatcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgtt 212  Q
    ||||||||| ||||| ||||||| |||||  | |||||| || |||||||||||||||||||||||||| || || || |||||||||||||||||||||    
T  1675046 atttggatccgttgttctgatacagtcaacaacatccttcaaccgaaagtttttcaaacctggaatccactcgacttttgtttccaaatatccatttgtt 1675145  T
Q  213 agatagctctcatctgcatatca 235  Q
    ||||  |||||||||||||||||    
T  1675146 agatgtctctcatctgcatatca 1675168  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 167 - 235
Target Start/End: Complemental strand, 20863105 - 20863037
Alignment:
Q  167 caaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatatca 235  Q
    |||||||||||||| ||| || ||||| ||||||||||||||||||||||| |||||||||| ||||||    
T  20863105 caaacctggaatccgatcaactttagtctccaaatatccatttgttagataactctcatctgtatatca 20863037  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 20863268 - 20863217
Alignment:
Q  4 agagagcatttattacatcactctcaagttcattgaaagtattcaaaacaat 55  Q
    ||||| |||| || |||||||||||||| |||||||||||||| ||||||||    
T  20863268 agagaacattcataacatcactctcaagctcattgaaagtattgaaaacaat 20863217  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 16685544 - 16685482
Alignment:
Q  171 cctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgcatat 233  Q
    |||||||| || || || ||||| ||||||||||| ||||| ||||| |||||||||||||||    
T  16685544 cctggaatacagtccactttagtgtccaaatatccgtttgtcagataactctcatctgcatat 16685482  T

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Target: chr3 (Bit Score: 114; Significance: 9e-58; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 1281821 - 1282050
Alignment:
Q  1 aggagagagcatttattacatcactctcaagttcattgaaagtattcaaaacaattgtagcgtctccaggaactttatcagccgcatcaattacaaagtc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||| |  |||| |||| |||   ||||| |  || ||    
T  1281821 aggagagagcatttattacatcactctcaagttcattgaaagtattcaaaagaatagtagagtctctattaactctatctgccatttcaataaagaattc 1281920  T
Q  101 taacataatatcatttggatctgttgtcctgatactgtcaaagatatcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaa 200  Q
    |||||||||||| ||| ||||| |||||||||||  |||||  |||||||| || || || |||||||||||||||||||||||||| || |||||||||    
T  1281921 taacataatatcgtttcgatctcttgtcctgataaagtcaacaatatccttcaaccggaaatttttcaaacctggaatccaatctacttttgtttccaaa 1282020  T
Q  201 tatccatttgttagatagctctcatctgca 230  Q
    ||||||||||||||||| ||||||||||||    
T  1282021 tatccatttgttagataactctcatctgca 1282050  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 198 - 233
Target Start/End: Original strand, 24103903 - 24103938
Alignment:
Q  198 aaatatccatttgttagatagctctcatctgcatat 233  Q
    |||||||||||||||||||| |||||||||||||||    
T  24103903 aaatatccatttgttagataactctcatctgcatat 24103938  T

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Target: scaffold0288 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 229
Target Start/End: Complemental strand, 3000 - 2918
Alignment:
Q  147 tcctttaatcgaaagtttttcaaacctggaatccaatctacattagtttccaaatatccatttgttagatagctctcatctgc 229  Q
    ||||||| |||||||||||||| ||| ||||| |||||||| ||  | |||||||||||| |||| | ||| || ||||||||    
T  3000 tcctttagtcgaaagtttttcatacccggaatacaatctactttgttgtccaaatatccacttgtcaaataactatcatctgc 2918  T

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