View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_106 (Length: 330)
Name: NF8518A_low_106
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_106 |
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Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 6 - 325
Target Start/End: Original strand, 7653934 - 7654253
Alignment:
| Q |
6 |
caataatatctcgaataggattacttcttgtgcaagaaacatattagaaaccnnnnnnnnnnnnnnnnnnccatcttgtgcaagaaacccacttgaagga |
105 |
Q |
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| T |
7653934 |
caataatatctcgaataggattacttcttgtgcaagaaacatattagaaaccaaaaagtaaaaaagaaaaccatcttgtgcaagaaacccacttgaagga |
7654033 |
T |
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| Q |
106 |
tactattgatacattgatgattaatatgaaagtatatgtggctagcaatcatgatttacttttctaacactcgtatacaaaatgtctccttactcatgtc |
205 |
Q |
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| T |
7654034 |
tattattgatacattgatgattaatatgaaagtatatgtgattagcaatcatgatttacttttctaacactcgtatacaaaatgtctccttactcatgtc |
7654133 |
T |
|
| Q |
206 |
acaacacaatttataatatatatcacactcattccattgcatcgccactatattattttgaaactaaaatgcattaaaaataaacttggtcagttctgtt |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7654134 |
acaacacaatttataatatatatcacactcattccattgcatcgccactatattattttgaaactaaaatgcattaaaaataaacttggtcagttctgtt |
7654233 |
T |
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| Q |
306 |
tgtcctcaaatgttaaggct |
325 |
Q |
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|||||||||||||||||||| |
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| T |
7654234 |
tgtcctcaaatgttaaggct |
7654253 |
T |
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