View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8518A_low_109 (Length: 327)

Name: NF8518A_low_109
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8518A_low_109
NF8518A_low_109
[»] chr1 (9 HSPs)
chr1 (154-264)||(13417180-13417290)
chr1 (154-217)||(13679995-13680058)
chr1 (19-86)||(13679859-13679926)
chr1 (19-86)||(13417044-13417111)
chr1 (159-203)||(13535022-13535068)
chr1 (231-264)||(13538126-13538159)
chr1 (231-264)||(19066161-19066194)
chr1 (231-264)||(19114051-19114084)
chr1 (158-203)||(20472139-20472186)
[»] scaffold0006 (3 HSPs)
scaffold0006 (157-222)||(47441-47506)
scaffold0006 (220-264)||(47541-47585)
scaffold0006 (231-264)||(94852-94885)
[»] scaffold0069 (1 HSPs)
scaffold0069 (231-264)||(20601-20634)


Alignment Details
Target: chr1 (Bit Score: 111; Significance: 5e-56; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 154 - 264
Target Start/End: Original strand, 13417180 - 13417290
Alignment:
Q  154 ttggaagtgatggaaagttatctcatattttctgcatctttaatttgtaccacactatgaagagattggttagaggtactcagaaatagtgatggaaagt 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13417180 ttggaagtgatggaaagttatctcatattttctgcatctttaatttgtaccacactatgaagagattggttagaggtactcagaaatagtgatggaaagt 13417279  T
Q  254 tatctcatata 264  Q
    |||||||||||    
T  13417280 tatctcatata 13417290  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 154 - 217
Target Start/End: Original strand, 13679995 - 13680058
Alignment:
Q  154 ttggaagtgatggaaagttatctcatattttctgcatctttaatttgtaccacactatgaagag 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13679995 ttggaagtgatggaaagttatctcatattttctgcatctttaatttgtaccacactattaagag 13680058  T

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Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 13679859 - 13679926
Alignment:
Q  19 aaaagtgactttgctccactattaatttgtctctttaattatactaagagatctgacgctttaatccc 86  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  13679859 aaaagtgactctgccccactattaatttgtctctttaattatactaagagatttgacgctttaatccc 13679926  T

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Target: chr1; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 13417044 - 13417111
Alignment:
Q  19 aaaagtgactttgctccactattaatttgtctctttaattatactaagagatctgacgctttaatccc 86  Q
    |||||||||| ||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  13417044 aaaagtgactctgccccactattaatttgcctctttaattatactaagagatttgacgctttaatccc 13417111  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 159 - 203
Target Start/End: Original strand, 13535022 - 13535068
Alignment:
Q  159 agtgatggaaagttatctc--atattttctgcatctttaatttgtac 203  Q
    |||||||||||||||||||  ||||||||||||| ||||||||||||    
T  13535022 agtgatggaaagttatctcatatattttctgcatttttaatttgtac 13535068  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 264
Target Start/End: Original strand, 13538126 - 13538159
Alignment:
Q  231 actcagaaatagtgatggaaagttatctcatata 264  Q
    ||||| ||||||||||||||||||||||||||||    
T  13538126 actcaaaaatagtgatggaaagttatctcatata 13538159  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 264
Target Start/End: Complemental strand, 19066194 - 19066161
Alignment:
Q  231 actcagaaatagtgatggaaagttatctcatata 264  Q
    ||||| ||||||||||||||||||||||||||||    
T  19066194 actcaaaaatagtgatggaaagttatctcatata 19066161  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 264
Target Start/End: Complemental strand, 19114084 - 19114051
Alignment:
Q  231 actcagaaatagtgatggaaagttatctcatata 264  Q
    ||||| ||||||||||||||||||||||||||||    
T  19114084 actcaaaaatagtgatggaaagttatctcatata 19114051  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 203
Target Start/End: Original strand, 20472139 - 20472186
Alignment:
Q  158 aagtgatggaaagttatctcatat--tttctgcatctttaatttgtac 203  Q
    ||||||||||||||||| ||||||  ||||||||| ||||||||||||    
T  20472139 aagtgatggaaagttatatcatatattttctgcatttttaatttgtac 20472186  T

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Target: scaffold0006 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 157 - 222
Target Start/End: Original strand, 47441 - 47506
Alignment:
Q  157 gaagtgatggaaagttatctcatattttctgcatctttaatttgtaccacactatgaagagattgg 222  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||    
T  47441 gaagtgatggaaagttatctcttattttctgcatctttaatttgtaccgcactatgaagtgattgg 47506  T

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Target: scaffold0006; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 47541 - 47585
Alignment:
Q  220 tggttagaggtactcagaaatagtgatggaaagttatctcatata 264  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  47541 tggttagaggtactcaaaaatagtgatggaaagttatctcatata 47585  T

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Target: scaffold0006; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 264
Target Start/End: Original strand, 94852 - 94885
Alignment:
Q  231 actcagaaatagtgatggaaagttatctcatata 264  Q
    ||||| ||||||||||||||||||||||||||||    
T  94852 actcaaaaatagtgatggaaagttatctcatata 94885  T

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Target: scaffold0069 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 264
Target Start/End: Original strand, 20601 - 20634
Alignment:
Q  231 actcagaaatagtgatggaaagttatctcatata 264  Q
    ||||| ||||||||||||||||||||||||||||    
T  20601 actcaaaaatagtgatggaaagttatctcatata 20634  T

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