View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_11 (Length: 490)
Name: NF8518A_low_11
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_11 |
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| [»] scaffold0018 (2 HSPs) |
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| [»] scaffold0202 (1 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 16 - 294
Target Start/End: Complemental strand, 170104 - 169826
Alignment:
| Q |
16 |
catcagaaggctagaatcatgacagttacataaaagaggagataaatagaaagaaaatatatatctcttttcttaatgttagctactaaactacattgaa |
115 |
Q |
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| T |
170104 |
catcagaaggctagaatcatgacagttacataaaagatgagataaatagaaagaaaatatatatctcttttcttaatgttagctactaaactacattgaa |
170005 |
T |
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| Q |
116 |
attattgtgatgcaagcaatggtacctcttatatttgagttgatgtctgtgatattacgagctgcaagctatcgtatcagttctaaagcaaaccgaatgg |
215 |
Q |
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| T |
170004 |
attattgtgatgcaagcaatggtacctcttatatttgagttgatgtctgtgatattacgagctgcaagctatcgtatcagttctaaagcaaaccgaatgg |
169905 |
T |
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| Q |
216 |
tataattacgagcgaccatattacatttggtccatttaaataggaagcttaagcgaagtatgataaaattcatctcaat |
294 |
Q |
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| T |
169904 |
tataattacgagcgaccatattacatttgtttcatttaaatatgaagcttaagcgaagtatgataaaattcatctcaat |
169826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 362 - 421
Target Start/End: Complemental strand, 169732 - 169673
Alignment:
| Q |
362 |
ctatgtcagaatctcataatgttcaaaaaggaattgtattgttttctattacttatcata |
421 |
Q |
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| T |
169732 |
ctatgtcaaaatctcataatgttcaaaaaggaattgtattgttttctattacttatcata |
169673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 294
Target Start/End: Original strand, 31053145 - 31053415
Alignment:
| Q |
16 |
catcagaaggctagaatcatgacagttacataaaagaggagataaatagaaagaaaatatatatctcttttcttaatgttagctactaaactacattgaa |
115 |
Q |
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| T |
31053145 |
catcagaaggctagaatcatgacagttacataaaagaggagataaatagaaagaaaatatatatctcttttcttaatgttagctactaaactacattgaa |
31053244 |
T |
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| Q |
116 |
attattgtgatgcaagcaatggtacctcttatatttgagttgatgtctgtgatattacgagctgcaagctatcgtatcagttctaaagcaaaccgaatgg |
215 |
Q |
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| T |
31053245 |
attattgtgatgcaagcaatggtacctcttatatttgagttgatgtctgtgatattacgagctgcaagctatcgtatcagttctaaagcaaaccg----- |
31053339 |
T |
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| Q |
216 |
tataattacgagcgaccatattacatttggtccatttaaataggaagcttaagcgaagtatgataaaattcatctcaat |
294 |
Q |
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| T |
31053340 |
---aattacgagcgaccatattacatttgttccatttaaatatgaagcttaagcgaagtatgataaaattcatctcaat |
31053415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 5380251 - 5380313
Alignment:
| Q |
19 |
cagaaggctagaatca-tgacagttacataaaagaggagataaatagaaagaaaatatatatctct |
83 |
Q |
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| T |
5380251 |
cagaaggctagaatcaatgacagttacaca---gaggagataaatagcaagaaaatatatacctct |
5380313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 6428 - 6481
Alignment:
| Q |
94 |
ttagctactaaactacattgaaattattgtgatgcaagcaatggtacctcttat |
147 |
Q |
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| T |
6428 |
ttagctactaacctacaatgaaatgattctgatgcaagcattggtacttcttat |
6481 |
T |
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