View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8518A_low_110 (Length: 325)

Name: NF8518A_low_110
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8518A_low_110
NF8518A_low_110
[»] chr1 (10 HSPs)
chr1 (1-325)||(11034438-11034759)
chr1 (67-325)||(11009103-11009346)
chr1 (58-147)||(10921628-10921717)
chr1 (58-138)||(11003344-11003424)
chr1 (58-136)||(11000366-11000444)
chr1 (159-319)||(10975216-10975376)
chr1 (71-143)||(10905232-10905304)
chr1 (62-130)||(10975134-10975202)
chr1 (58-142)||(10987989-10988073)
chr1 (58-142)||(11019157-11019241)


Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 11034438 - 11034759
Alignment:
Q  1 attacagtgagcctggttattttgatcgagctccgcatacgcatatgaaacatctaatttacaaaaactgttgagccaagaaagttcaaatccataaaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11034438 attacagtgagcctggttattttgatcgagctccgcatacgcatacgaaacatctaatttacaaaaactgttgagccaagaaagttcaaatccataaaac 11034537  T
Q  101 atctcacgacggatatccgcgcaagaaatgctgttgttgttgttgtgatcagcaccatcatcttcaacatccaaagaagtgagatacataaactgtatac 200  Q
    ||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11034538 atctcacgacggatatccgcgcaagaaatg---ttgttgttgttgtgatcagcaccatcatcttcaacatccaaagaagtgagatacataaactgtatac 11034634  T
Q  201 gacacccatctcccagcccgaattccgacagagatttgccatagctaccaacatagaaagaattcacatcctgtgagtgtgaagttctattcatacaatt 300  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  11034635 gacacccatctcccagcccgaattccgacagagatttaccatagctaccaacatagaaagaattcacatcctgtgaatttgaagttctattcatacaatt 11034734  T
Q  301 accaatgtatgagtattccatccga 325  Q
    |||||||||||||||||||||||||    
T  11034735 accaatgtatgagtattccatccga 11034759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 67 - 325
Target Start/End: Original strand, 11009103 - 11009346
Alignment:
Q  67 actgttgagccaagaaagttcaaatccataaaacatctcacgacggatatccgcgcaagaaatgctgttgttgttgttgtgatcagcaccatcatcttca 166  Q
    ||||||||||||||||||||||||||||||| |||||  |||||| || || |  ||||||||| ||||| |||||            ||||||||||||    
T  11009103 actgttgagccaagaaagttcaaatccataatacatcctacgacgaatgtctgtacaagaaatgttgttgatgttg------------ccatcatcttca 11009190  T
Q  167 acatccaaagaagtgagatacataaactgtatacgacacccatctcccagcccgaattccgacagagatttgccatagctaccaacatagaaagaattca 266  Q
    |||||| |||   ||||||||||||||| |||| ||||||| ||||||| ||| |||||| |||||||||| ||||||| ||||||||||||||||||||    
T  11009191 acatcccaag---tgagatacataaactctatatgacacccgtctcccaacccaaattccaacagagatttaccatagccaccaacatagaaagaattca 11009287  T
Q  267 catcctgtgagtgtgaagttctattcatacaattaccaatgtatgagtattccatccga 325  Q
    |||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||    
T  11009288 catcctgtgaatatgaagttctattcatacaattaccaatgtatgaatattccatccga 11009346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 58 - 147
Target Start/End: Original strand, 10921628 - 10921717
Alignment:
Q  58 tttacaaaaactgttgagccaagaaagttcaaatccataaaacatctcacgacggatatccgcgcaagaaatgctgttgttgttgttgtg 147  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || | ||| |||||| ||||||| ||||||||    
T  10921628 tttacaaaaactgttgagccaagaaagttcaaatccataaaagatctcacgacggatgtctgtgcatgaaatgttgttgtttttgttgtg 10921717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 138
Target Start/End: Complemental strand, 11003424 - 11003344
Alignment:
Q  58 tttacaaaaactgttgagccaagaaagttcaaatccataaaacatctcacgacggatatccgcgcaagaaatgctgttgtt 138  Q
    |||||||| ||| |||||||| ||||||||||||||||||||||||  |||| | |||||||  ||||||||| |||||||    
T  11003424 tttacaaagactattgagccatgaaagttcaaatccataaaacatcatacgatgaatatccgtacaagaaatgttgttgtt 11003344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 58 - 136
Target Start/End: Complemental strand, 11000444 - 11000366
Alignment:
Q  58 tttacaaaaactgttgagccaagaaagttcaaatccataaaacatctcacgacggatatccgcgcaagaaatgctgttg 136  Q
    ||||||||  || |||||||| ||||||||||||||||||||||||  |||||| ||||||| |||| ||||| |||||    
T  11000444 tttacaaaggctattgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtgcaaaaaatgttgttg 11000366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 319
Target Start/End: Original strand, 10975216 - 10975376
Alignment:
Q  159 catcttcaacatccaaagaagtgagatacataaactgtatacgacacccatctcccagcccgaattccgacagagatttgccatagctaccaacatagaa 258  Q
    ||||||||| ||  ||||| |||||||||||||||| || ||||||    |||  || | | |||||||| ||||||||||  |||| ||||||||||||    
T  10975216 catcttcaaaatttaaagatgtgagatacataaactctacacgacaagtgtctttcaacaccaattccgaaagagatttgctgtagcgaccaacatagaa 10975315  T
Q  259 agaattcacatcctgtgagtgtgaagttctattcatacaattaccaatgtatgagtattcc 319  Q
    |  |||| | |  ||||||| ||||   ||| ||||||| ||||||| |||||||||||||    
T  10975316 acgattcccgtgttgtgagtatgaaccactactcatacagttaccaacgtatgagtattcc 10975376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 143
Target Start/End: Original strand, 10905232 - 10905304
Alignment:
Q  71 ttgagccaagaaagttcaaatccataaaacatctcacgacggatatccgcgcaagaaatgctgttgttgttgt 143  Q
    ||||||||||||| ||||||||||||| |||||  ||||||||  |||  |||||||||| |  |||||||||    
T  10905232 ttgagccaagaaaattcaaatccataatacatcatacgacggaagtccttgcaagaaatgttactgttgttgt 10905304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 10975134 - 10975202
Alignment:
Q  62 caaaaactgttgagccaagaaagttcaaatccataaaacatctcacgacggatatccgcgcaagaaatg 130  Q
    |||| ||| ||||||||||||| ||||||||||||| |||||  ||||||||  |||  ||||||||||    
T  10975134 caaatactattgagccaagaaaattcaaatccataatacatcatacgacggaagtccttgcaagaaatg 10975202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 142
Target Start/End: Original strand, 10987989 - 10988073
Alignment:
Q  58 tttacaaaaactgttgagccaagaaagttcaaatccataaaacatctcacgacggatatccgcgcaagaaatgctgttgttgttg 142  Q
    |||||||| ||| ||||||||||| | ||||||||||||| |||||  |||   ||| |||| |||||||||| | |||||||||    
T  10987989 tttacaaagactattgagccaagagacttcaaatccataagacatcatacggttgatgtccgtgcaagaaatgttattgttgttg 10988073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 142
Target Start/End: Original strand, 11019157 - 11019241
Alignment:
Q  58 tttacaaaaactgttgagccaagaaagttcaaatccataaaacatctcacgacggatatccgcgcaagaaatgctgttgttgttg 142  Q
    |||||||| ||| ||||||||||| | ||||||||||||| |||||  |||   ||| |||| |||||||||| | |||||||||    
T  11019157 tttacaaagactattgagccaagagacttcaaatccataagacatcatacggttgatgtccgtgcaagaaatgttattgttgttg 11019241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University