View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_112 (Length: 322)
Name: NF8518A_low_112
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_112 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 6 - 310
Target Start/End: Original strand, 51547169 - 51547473
Alignment:
| Q |
6 |
acacttacaagcatgttagtaattctctgtcaatgtttcctaagcctgaggtaagagcttctaaaggacatggaaaccggcgtttaatggatgctctcac |
105 |
Q |
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| T |
51547169 |
acacttacaaacatgttagtaattctctgtcaatgtttcctaagcctgaggtaagagcttctaaaggacatggaaaccggcgtttaatggatgctctcat |
51547268 |
T |
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| Q |
106 |
gtggttatcaagcaaagatcgccgcaggttcttgcaaagcaccgacaatgtgattgttgtggctgcagatggaacgggaaactttagcaccattaatgaa |
205 |
Q |
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| T |
51547269 |
gtggttatcaagcaaagatcaccgcaggttcttgcaaagcaccgacaatgtgattgttgtggctgcagatggaacgggaaactttagcaccattaatgaa |
51547368 |
T |
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| Q |
206 |
gccattgaatttgctccaaataacagctatgctaggataataatctatgtaaaagaagggatatatgaggaaaatgttgaaatttcaagcaataaaacca |
305 |
Q |
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| T |
51547369 |
gccattgaatttgctccaaataacagctatgctaggataataatctatgtaaaagaagggatatatgaggaaaatgttgaaatttcaagcaataaaacca |
51547468 |
T |
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| Q |
306 |
atatt |
310 |
Q |
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||||| |
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| T |
51547469 |
atatt |
51547473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 168 - 288
Target Start/End: Original strand, 19475223 - 19475343
Alignment:
| Q |
168 |
ctgcagatggaacgggaaactttagcaccattaatgaagccattgaatttgctccaaataacagctatgctaggataataatctatgtaaaagaagggat |
267 |
Q |
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|||||||||||| |||||||||||||| |||||||| || || | |||||||||||||| || | | ||||||| | || ||||| ||||||||| |
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| T |
19475223 |
ctgcagatggaagtggaaactttagcactattaatgatgctataaactttgctccaaataatagtttggttaggatagttatttatgttaaagaagggta |
19475322 |
T |
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| Q |
268 |
atatgaggaaaatgttgaaat |
288 |
Q |
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| T |
19475323 |
ttatgatgaaaatgttgaaat |
19475343 |
T |
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