View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_118 (Length: 312)
Name: NF8518A_low_118
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_118 |
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| [»] scaffold0432 (1 HSPs) |
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Alignment Details
Target: scaffold0432 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 312
Target Start/End: Original strand, 4029 - 4330
Alignment:
| Q |
13 |
gttaacagatgccaaatnnnnnnnncaccgcaatttagaatgtaaaagaaatttgataaatggagatgaattcaaatctatgagattatatgacagtacc |
112 |
Q |
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| T |
4029 |
gttaacagatgccaaataaaaaaaacaccgcaatttataacgtaaaagaaatttgataaatggagatgagttcaaatttatgagaatatatgactgtacc |
4128 |
T |
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| Q |
113 |
acacctaataatttcgcgtagtggatccgtaatatattccctcaatgcataagtagcat--gaaattatttgaaactcattctatcttcacttgtaattg |
210 |
Q |
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| T |
4129 |
acacctaataatttcatgtagtggatccgtaatatattcccgcaatgtataagtagcatatgaaattatttgaaactcattctatcttcacttgtaattg |
4228 |
T |
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| Q |
211 |
tgaattccaaattaagatgtaatttaaaccattaaaaactgataattataaaactgttgaatttgtgactattatttcaaattatcgaggacacaccaat |
310 |
Q |
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| T |
4229 |
tgaattccaaattaagatgtaatttaaaccattaaaaactgataattataaaactgttgaatttgtggctattatttcaaattatcgaggacacaacaat |
4328 |
T |
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| Q |
311 |
aa |
312 |
Q |
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| T |
4329 |
aa |
4330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 46 - 284
Target Start/End: Complemental strand, 5000264 - 5000026
Alignment:
| Q |
46 |
tttagaatgtaaaagaaatttgataaatggagatgaattcaaatctatgagattatatgacagtaccacacctaataatttcgcgtagtggatccgtaat |
145 |
Q |
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| T |
5000264 |
tttagaatgtaaaagaaatttgataaatggagatgagttcaaacttatgagaatatatgacagtaccacacctaataattttgtggagcggattcgtaat |
5000165 |
T |
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| Q |
146 |
atattccctcaatgcataagtagcatgaaattatttgaaactcattctatcttcacttgtaattgtgaattccaaattaagatgtaatttaaaccattaa |
245 |
Q |
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| T |
5000164 |
atattccctcaatgtataagtagcatgaaattatttgaaactcattctatcttcacttgtaattgtgaattccaaattaagatgtaatttaaactattaa |
5000065 |
T |
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| Q |
246 |
aaactgataattataaaactgttgaatttgtgactatta |
284 |
Q |
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| T |
5000064 |
aaactgataattagaaaacaattgaatttgtgactatta |
5000026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 38 - 282
Target Start/End: Complemental strand, 52685016 - 52684772
Alignment:
| Q |
38 |
caccgcaatttagaatgtaaaagaaatttgataaatggagatgaattcaaatctatgagattatatgacagtaccacacctaataatttcgcgtagtgga |
137 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||| | | || ||| |
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| T |
52685016 |
caccgcagtttagaatgtaaaagaaatttgataaatggagatgagttcaaacttatgagaatatatgacagtaccacacctaataattttgtggagcgga |
52684917 |
T |
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| Q |
138 |
tccgtaatatattccctcaatgcataagtagcatgaaattatttgaaactcattctatcttcacttgtaattgtgaattccaaattaagatgtaatttaa |
237 |
Q |
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| T |
52684916 |
tccgtaatatattccctcaatgtataagtagcatgaaattatttgaaactcattctatcttcacttgtaattgtgaattccaaattaagatgtaacttaa |
52684817 |
T |
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| Q |
238 |
accattaaaaactgataattataaaactgttgaatttgtgactat |
282 |
Q |
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| T |
52684816 |
actattaaaaactgataattagaagacaattgaatttgtgactat |
52684772 |
T |
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