View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_121 (Length: 311)
Name: NF8518A_low_121
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_121 |
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| [»] scaffold0224 (1 HSPs) |
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Alignment Details
Target: scaffold0224 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 10 - 290
Target Start/End: Original strand, 551 - 831
Alignment:
| Q |
10 |
attatactcgatttgctgaacattaaccagggggaacatattcctttctaaggtttttgatttttgtatttaatttatttgatggaaaataaaattggta |
109 |
Q |
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| T |
551 |
attatattcgatttgctgaacattaaccggggggaacatattcctttctaaggtttttgatttttgtatttaatttattttatggaaaataaaattggta |
650 |
T |
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| Q |
110 |
cagtagtaatgatttgattacagtttggaaggaaggaaggcacgggaaaagcgcaagaagagggaagttacggtaaaaaagaagtgtttgtgacagtcaa |
209 |
Q |
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| T |
651 |
cagtagtaatgatttgattacggtttggaaggaaggaaggcacgggaaaagcgcaagaagggggaagttacggtaaaaaagaagtgttggtgacagtcaa |
750 |
T |
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| Q |
210 |
atcatggaagttataaaaatcattactcctttacttcattcaccttccatgcttgtctgtgtctcatggacatttcatatg |
290 |
Q |
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| T |
751 |
atcatggaagttataaaaatcattactcctttacttcattcaccttccatgcttgtctgtgtctcatggacatttcatatg |
831 |
T |
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Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 10 - 290
Target Start/End: Complemental strand, 42904335 - 42904055
Alignment:
| Q |
10 |
attatactcgatttgctgaacattaaccagggggaacatattcctttctaaggtttttgatttttgtatttaatttatttgatggaaaataaaattggta |
109 |
Q |
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|||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42904335 |
attatattcgatttgctgaacattaaccggggggaacatattcctttctaaggtttttgatttttgtatttaatttattttatggaaaataaaattggta |
42904236 |
T |
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| Q |
110 |
cagtagtaatgatttgattacagtttggaaggaaggaaggcacgggaaaagcgcaagaagagggaagttacggtaaaaaagaagtgtttgtgacagtcaa |
209 |
Q |
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| T |
42904235 |
cagtagtaatgatttgattacggtttggaaggaaggaaggcacgggaaaagcgcaagaagggggaagttacggtaaaaaagaagtgttggtgacagtcaa |
42904136 |
T |
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| Q |
210 |
atcatggaagttataaaaatcattactcctttacttcattcaccttccatgcttgtctgtgtctcatggacatttcatatg |
290 |
Q |
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| T |
42904135 |
atcatggaagttataaaaatcattactcctttacttcattcaccttccatgcttgtctgtgtctcatggacatttcatatg |
42904055 |
T |
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