View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8518A_low_127 (Length: 309)

Name: NF8518A_low_127
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8518A_low_127
NF8518A_low_127
[»] chr4 (14 HSPs)
chr4 (17-305)||(42533576-42533857)
chr4 (167-305)||(44432656-44432794)
chr4 (162-305)||(5274266-5274409)
chr4 (167-305)||(22047140-22047278)
chr4 (167-305)||(4839767-4839905)
chr4 (162-305)||(46692769-46692911)
chr4 (162-304)||(55326162-55326304)
chr4 (162-289)||(26069069-26069195)
chr4 (161-287)||(6639355-6639481)
chr4 (162-291)||(19248428-19248556)
chr4 (167-298)||(8894230-8894360)
chr4 (167-279)||(35417446-35417557)
chr4 (210-287)||(30219079-30219155)
chr4 (167-279)||(40996292-40996404)
[»] chr5 (13 HSPs)
chr5 (162-305)||(24835147-24835290)
chr5 (162-305)||(11723906-11724049)
chr5 (162-305)||(30607811-30607954)
chr5 (167-305)||(14343885-14344023)
chr5 (167-305)||(33434000-33434138)
chr5 (167-305)||(7314378-7314516)
chr5 (167-305)||(9403713-9403851)
chr5 (167-305)||(34455587-34455725)
chr5 (162-297)||(11766144-11766279)
chr5 (167-304)||(6269309-6269447)
chr5 (167-305)||(34870300-34870437)
chr5 (172-284)||(30422188-30422299)
chr5 (201-255)||(42748256-42748310)
[»] chr2 (11 HSPs)
chr2 (162-305)||(29223102-29223245)
chr2 (162-305)||(29336401-29336544)
chr2 (167-305)||(8684070-8684209)
chr2 (162-303)||(32522383-32522515)
chr2 (167-305)||(36668470-36668607)
chr2 (162-228)||(29226728-29226794)
chr2 (162-228)||(29340027-29340093)
chr2 (162-287)||(27256908-27257032)
chr2 (162-246)||(31757713-31757798)
chr2 (169-228)||(29792577-29792636)
chr2 (167-246)||(40199502-40199582)
[»] chr1 (12 HSPs)
chr1 (161-305)||(38122667-38122811)
chr1 (167-305)||(16833380-16833518)
chr1 (167-305)||(12168806-12168944)
chr1 (167-305)||(33492826-33492963)
chr1 (170-305)||(13218665-13218800)
chr1 (167-280)||(39453350-39453462)
chr1 (167-285)||(25242410-25242528)
chr1 (167-279)||(16129004-16129115)
chr1 (167-295)||(13829598-13829725)
chr1 (201-255)||(7062711-7062765)
chr1 (201-255)||(13249909-13249963)
chr1 (167-243)||(432869-432945)
[»] chr3 (12 HSPs)
chr3 (162-305)||(3587788-3587931)
chr3 (167-305)||(27031417-27031555)
chr3 (167-296)||(10407589-10407718)
chr3 (161-305)||(4755488-4755632)
chr3 (167-305)||(52045513-52045651)
chr3 (167-305)||(52308623-52308761)
chr3 (157-305)||(7653851-7653998)
chr3 (162-305)||(8614913-8615055)
chr3 (153-301)||(36470063-36470211)
chr3 (167-272)||(11263597-11263703)
chr3 (167-290)||(33247302-33247424)
chr3 (214-246)||(25804553-25804585)
[»] chr8 (15 HSPs)
chr8 (167-305)||(27347440-27347578)
chr8 (162-305)||(27353515-27353658)
chr8 (162-305)||(28926774-28926917)
chr8 (167-297)||(3298195-3298325)
chr8 (167-305)||(22179903-22180041)
chr8 (161-305)||(8743998-8744142)
chr8 (167-305)||(9068797-9068935)
chr8 (162-305)||(36737491-36737633)
chr8 (167-298)||(1606596-1606726)
chr8 (167-238)||(16957901-16957972)
chr8 (162-220)||(28369584-28369642)
chr8 (162-246)||(4435537-4435621)
chr8 (167-279)||(24040006-24040117)
chr8 (167-246)||(21687382-21687462)
chr8 (167-246)||(21691706-21691786)
[»] chr7 (18 HSPs)
chr7 (167-305)||(22817832-22817970)
chr7 (160-305)||(7143044-7143189)
chr7 (161-305)||(23794481-23794625)
chr7 (167-305)||(10346936-10347074)
chr7 (167-297)||(31158914-31159044)
chr7 (162-305)||(2630809-2630951)
chr7 (167-305)||(12183259-12183397)
chr7 (167-305)||(22322514-22322652)
chr7 (162-305)||(19472890-19473033)
chr7 (167-305)||(45501261-45501400)
chr7 (167-305)||(2477074-2477212)
chr7 (162-305)||(2798171-2798314)
chr7 (167-305)||(31878015-31878153)
chr7 (167-247)||(31001376-31001456)
chr7 (176-248)||(8139848-8139920)
chr7 (167-245)||(31665265-31665343)
chr7 (162-255)||(24169396-24169489)
chr7 (162-255)||(20403074-20403168)
[»] chr6 (13 HSPs)
chr6 (167-305)||(26511131-26511269)
chr6 (167-305)||(26516247-26516385)
chr6 (162-305)||(34005893-34006036)
chr6 (167-297)||(3538441-3538571)
chr6 (167-305)||(9934615-9934753)
chr6 (162-305)||(24161855-24161997)
chr6 (170-295)||(26603622-26603746)
chr6 (167-305)||(31131280-31131417)
chr6 (210-305)||(15641761-15641855)
chr6 (167-255)||(2298290-2298378)
chr6 (167-302)||(5671670-5671804)
chr6 (167-302)||(24878410-24878544)
chr6 (201-255)||(18751341-18751395)
[»] scaffold0015 (2 HSPs)
scaffold0015 (162-297)||(174033-174168)
scaffold0015 (162-297)||(185191-185326)
[»] scaffold0002 (1 HSPs)
scaffold0002 (167-305)||(354370-354508)
[»] scaffold1494 (1 HSPs)
scaffold1494 (162-305)||(954-1096)
[»] scaffold0019 (1 HSPs)
scaffold0019 (162-305)||(117261-117404)
[»] scaffold0059 (1 HSPs)
scaffold0059 (167-305)||(17103-17241)
[»] scaffold0014 (1 HSPs)
scaffold0014 (167-253)||(79922-80008)
[»] scaffold0744 (1 HSPs)
scaffold0744 (167-291)||(1851-1974)
[»] scaffold0458 (1 HSPs)
scaffold0458 (167-295)||(10197-10324)
[»] scaffold0871 (1 HSPs)
scaffold0871 (161-244)||(4325-4408)


Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 305
Target Start/End: Complemental strand, 42533857 - 42533576
Alignment:
Q  17 acatcaatagtttgaggcgactagctcaccttgccaggtccggaccaaatcaacggcaaatggaatatgctaagaaatatgacaacacacggattcacat 116  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||       |||||| ||||||||    
T  42533857 acatcaatagtttgaggcgactagctcaccttaccaggtccggaccaaatcaacggcaaatggaatatgctaagaaat-------cacacgaattcacat 42533765  T
Q  117 cttccgcaatggttttcaacagcaacacaaattcttgcttgatgcttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtga 216  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  42533764 cttcctcaatggttttcaacagcaacacagattcttgcttgatgcttgataagtgctcaaaagtaacatatttcatgtgctaacttaggcaaattagtga 42533665  T
Q  217 cttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttcaccatttatgctttacatgcctgattctacccattttatg 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  42533664 cttgttttgcaagttatctaaggaaaagctaccatttgagtgtatttttaccatttatgctttacatgcctgattctatccattttatg 42533576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 167 - 305
Target Start/End: Complemental strand, 44432794 - 44432656
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttca 266  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  44432794 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 44432695  T
Q  267 ccatttatgctttacatgcctgattctacccattttatg 305  Q
    |||||||||||||||||| ||||||||||||| ||||||    
T  44432694 ccatttatgctttacatgtctgattctacccaatttatg 44432656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 162 - 305
Target Start/End: Complemental strand, 5274409 - 5274266
Alignment:
Q  162 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 261  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5274409 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaa 5274310  T
Q  262 tttcaccatttatgctttacatgcctgattctacccattttatg 305  Q
    | | |||||||||||||||||||||||||||||| || ||||||    
T  5274309 tattaccatttatgctttacatgcctgattctacgcaatttatg 5274266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 167 - 305
Target Start/End: Original strand, 22047140 - 22047278
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttca 266  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||| |    
T  22047140 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgatttgttttgcaagttatctaaggaaaagctaccatttgagtgcaatttta 22047239  T
Q  267 ccatttatgctttacatgcctgattctacccattttatg 305  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  22047240 ccatttatgctttacatgcctgattctacccaatttatg 22047278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 167 - 305
Target Start/End: Complemental strand, 4839905 - 4839767
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttca 266  Q
    ||||||||||||||||||||||| ||||| |||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||| | ||| |    
T  4839905 aagtgctcaaaagtaacatatttcatgtgttaacttaggcgaattagtgatttgttttgcaagttatctgaggaaaagctaccatttgagtgcaatttta 4839806  T
Q  267 ccatttatgctttacatgcctgattctacccattttatg 305  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  4839805 ccatttatgctttacatgcctgattctacccaatttatg 4839767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 162 - 305
Target Start/End: Complemental strand, 46692911 - 46692769
Alignment:
Q  162 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 261  Q
    |||| ||||||||||| |||| |||||||||||| |||  ||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  46692911 ttgataagtgctcaaa-gtaatatattttatgtgttaatctaggcattttagtgacttgttttgcaagttatctaaggaaaagctatcatttgagtgtat 46692813  T
Q  262 tttcaccatttatgctttacatgcctgattctacccattttatg 305  Q
    ||  ||||||||||||||||||||||||||||||||| ||||||    
T  46692812 ttataccatttatgctttacatgcctgattctacccaatttatg 46692769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 162 - 304
Target Start/End: Original strand, 55326162 - 55326304
Alignment:
Q  162 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 261  Q
    |||| ||||||||||||||||||||||||||||  |||  |||| |  ||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  55326162 ttgataagtgctcaaaagtaacatattttatgtattaatctaggaagtttagtgacttgttctgcaagttatctaaggaaaaactaccatttgagtgtat 55326261  T
Q  262 tttcaccatttatgctttacatgcctgattctacccattttat 304  Q
    ||  |||||||| |||||||||||||||||||||||| |||||    
T  55326262 ttgtaccatttacgctttacatgcctgattctacccaatttat 55326304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 162 - 289
Target Start/End: Original strand, 26069069 - 26069195
Alignment:
Q  162 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctacc-atttgagtgta 260  Q
    |||| ||||||||||||||||||||||||||||| |||  ||||||  ||||||||||||| ||||||||||||||| |||||||||| | ||| || ||    
T  26069069 ttgataagtgctcaaaagtaacatattttatgtgttaatctaggcattttagtgacttgttctgcaagttatctaagaaaaagctacctaattgtgt-ta 26069167  T
Q  261 ttttcaccatttatgctttacatgcctga 289  Q
    |||| ||||||||||||||||||||||||    
T  26069168 tttt-accatttatgctttacatgcctga 26069195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 161 - 287
Target Start/End: Original strand, 6639355 - 6639481
Alignment:
Q  161 cttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgta 260  Q
    ||||| |||||||||| ||||| |||||| ||||| ||| |||||||  || ||||||||||||||||||||||||||||||||||||||  |   ||||    
T  6639355 cttgataagtgctcaagagtaatatatttcatgtgttaatttaggcattttggtgacttgttttgcaagttatctaaggaaaagctaccaacttgttgta 6639454  T
Q  261 ttttcaccatttatgctttacatgcct 287  Q
     ||| ||||||||||||||||||||||    
T  6639455 attttaccatttatgctttacatgcct 6639481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 162 - 291
Target Start/End: Complemental strand, 19248556 - 19248428
Alignment:
Q  162 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 261  Q
    |||| ||||||||||||| |||| |||||||||| |||  ||||||  |||||| ||||||||||||||||||||||||||| ||| || |||  || ||    
T  19248556 ttgataagtgctcaaaagcaacacattttatgtgttaatctaggcactttagtggcttgttttgcaagttatctaaggaaaatctatcaattg-ttgcat 19248458  T
Q  262 tttcaccatttatgctttacatgcctgatt 291  Q
    ||| ||||||||||||||||||||||||||    
T  19248457 ttttaccatttatgctttacatgcctgatt 19248428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 167 - 298
Target Start/End: Original strand, 8894230 - 8894360
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttca 266  Q
    |||||||||||| | | |||||| ||||| ||| |||||||  |||||||||||||||||||||||||||||| |||||||| |||||| |||| ||       
T  8894230 aagtgctcaaaactgatatatttcatgtgttaatttaggcattttagtgacttgttttgcaagttatctaaggtaaagctacaatttga-tgtaattatg 8894328  T
Q  267 ccatttatgctttacatgcctgattctaccca 298  Q
    ||||||||||||||  ||||| ||| ||||||    
T  8894329 ccatttatgctttatgtgccttattgtaccca 8894360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 167 - 279
Target Start/End: Complemental strand, 35417557 - 35417446
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttca 266  Q
    |||||||||||||||  || ||| ||||| ||| | |||||  ||||||||||||||||||| |||||||||||||||| | ||||||  |||| ||| |    
T  35417557 aagtgctcaaaagtactatctttcatgtgttaaataaggcattttagtgacttgttttgcaaattatctaaggaaaagcaatcatttg-ttgtaatttga 35417459  T
Q  267 ccatttatgcttt 279  Q
    |||||||||||||    
T  35417458 ccatttatgcttt 35417446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 287
Target Start/End: Complemental strand, 30219155 - 30219079
Alignment:
Q  210 ttagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttcaccatttatgctttacatgcct 287  Q
    ||||||||||||| |||||||||||||||||||| | | || |||  |||| |||||| |||||||||||||||||||    
T  30219155 ttagtgacttgttctgcaagttatctaaggaaaaacaatcaattg-ttgtaatttcacaatttatgctttacatgcct 30219079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 279
Target Start/End: Complemental strand, 40996404 - 40996292
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttg-caagttatctaaggaaaagctaccatttgagtgtattttc 265  Q
    |||||||||||||||  || ||| ||||| |||  |||| |  |||||||||||||||| |||||||||||||||||||| | ||||| | |||| |||     
T  40996404 aagtgctcaaaagtattatctttcatgtgttaaaataggtattttagtgacttgttttgtcaagttatctaaggaaaagcaatcattt-attgtaatttg 40996306  T
Q  266 accatttatgcttt 279  Q
    ||||||||||||||    
T  40996305 accatttatgcttt 40996292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 124; Significance: 9e-64; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 162 - 305
Target Start/End: Original strand, 24835147 - 24835290
Alignment:
Q  162 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 261  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24835147 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 24835246  T
Q  262 tttcaccatttatgctttacatgcctgattctacccattttatg 305  Q
    ||| ||||||||||||||||||||||||||||||||| ||||||    
T  24835247 ttttaccatttatgctttacatgcctgattctacccaatttatg 24835290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 162 - 305
Target Start/End: Complemental strand, 11724049 - 11723906
Alignment:
Q  162 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 261  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  11724049 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaa 11723950  T
Q  262 tttcaccatttatgctttacatgcctgattctacccattttatg 305  Q
    ||| ||||||||||||||||||||||||||||||||| ||||||    
T  11723949 ttttaccatttatgctttacatgcctgattctacccaatttatg 11723906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 162 - 305
Target Start/End: Complemental strand, 30607954 - 30607811
Alignment:
Q  162 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 261  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  30607954 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaa 30607855  T
Q  262 tttcaccatttatgctttacatgcctgattctacccattttatg 305  Q
    | | ||||||||||||||||||||||||||||||||| ||||||    
T  30607854 tattaccatttatgctttacatgcctgattctacccaatttatg 30607811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 167 - 305
Target Start/End: Original strand, 14343885 - 14344023
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttca 266  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |    
T  14343885 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaatttta 14343984  T
Q  267 ccatttatgctttacatgcctgattctacccattttatg 305  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  14343985 ccatttatgctttacatgcctgattctacccaatttatg 14344023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 167 - 305
Target Start/End: Original strand, 33434000 - 33434138
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttca 266  Q
    ||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |    
T  33434000 aagtgcttaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagttaccatttgagtgtattttta 33434099  T
Q  267 ccatttatgctttacatgcctgattctacccattttatg 305  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  33434100 ccatttatgctttacatgcctgattctacccaatttatg 33434138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 167 - 305
Target Start/End: Original strand, 7314378 - 7314516
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttca 266  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |    
T  7314378 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaatttta 7314477  T
Q  267 ccatttatgctttacatgcctgattctacccattttatg 305  Q
    |||||||||||||||||||||||||||||| | ||||||    
T  7314478 ccatttatgctttacatgcctgattctaccaaatttatg 7314516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 167 - 305
Target Start/End: Original strand, 9403713 - 9403851
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttca 266  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |    
T  9403713 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatatta 9403812  T
Q  267 ccatttatgctttacatgcctgattctacccattttatg 305  Q
    | |||||||||||||||||||||||||||||| ||||||    
T  9403813 ctatttatgctttacatgcctgattctacccaatttatg 9403851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 167 - 305
Target Start/End: Original strand, 34455587 - 34455725
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttca 266  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |    
T  34455587 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatatta 34455686  T
Q  267 ccatttatgctttacatgcctgattctacccattttatg 305  Q
    |||||||||||||||||||| ||||||||||| ||||||    
T  34455687 ccatttatgctttacatgcccgattctacccaatttatg 34455725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 162 - 297
Target Start/End: Original strand, 11766144 - 11766279
Alignment:
Q  162 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 261  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |     
T  11766144 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgactcgttttgcaagttatctaaggaaaagctaccatttgagtgcaa 11766243  T
Q  262 tttcaccatttatgctttacatgcctgattctaccc 297  Q
    ||| ||||||||||||||||||| ||||||||||||    
T  11766244 ttttaccatttatgctttacatgtctgattctaccc 11766279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 167 - 304
Target Start/End: Original strand, 6269309 - 6269447
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgta-ttttc 265  Q
    ||||||||||||||||||||||| ||||| |||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||     
T  6269309 aagtgctcaaaagtaacatatttcatgtgttaacctaggcaatttagtgacttgttttgcaagttatctaaggaaaatctaccatttgagtgtatttttt 6269408  T
Q  266 accatttatgctttacatgcctgattctacccattttat 304  Q
    ||||||||||||||||||| ||||||||||||| |||||    
T  6269409 accatttatgctttacatgtctgattctacccaatttat 6269447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 167 - 305
Target Start/End: Complemental strand, 34870437 - 34870300
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttca 266  Q
    ||||||||||||||||||||||||||||| |||  ||||||  |||||| ||||||||||||||||||||||||||| ||| || |||  || ||||| |    
T  34870437 aagtgctcaaaagtaacatattttatgtgttaatctaggcattttagtggcttgttttgcaagttatctaaggaaaaactatcaattg-ttgcattttta 34870339  T
Q  267 ccatttatgctttacatgcctgattctacccattttatg 305  Q
    |||||||||||||||||| |||||| | |||| ||||||    
T  34870338 ccatttatgctttacatgtctgattttgcccaatttatg 34870300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 172 - 284
Target Start/End: Original strand, 30422188 - 30422299
Alignment:
Q  172 ctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttcaccatt 271  Q
    ||||||||||| |||||| ||||| ||| |||||||  |||||||||||||||||||||||||||||||||| ||||||||| |  ||| |||  |||||    
T  30422188 ctcaaaagtaatatatttcatgtgttaatttaggcattttagtgacttgttttgcaagttatctaaggaaaaactaccattt-atcgtaattttgccatt 30422286  T
Q  272 tatgctttacatg 284  Q
    |||||||||||||    
T  30422287 tatgctttacatg 30422299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 255
Target Start/End: Complemental strand, 42748310 - 42748256
Alignment:
Q  201 ttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttga 255  Q
    |||||||  ||||| |||||||||||||||||| |||||||||||||| ||||||    
T  42748310 ttaggcactttagttacttgttttgcaagttatttaaggaaaagctacaatttga 42748256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 124; Significance: 9e-64; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 162 - 305
Target Start/End: Original strand, 29223102 - 29223245
Alignment:
Q  162 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 261  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29223102 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 29223201  T
Q  262 tttcaccatttatgctttacatgcctgattctacccattttatg 305  Q
    ||| ||||||||||||||||||||||||||||||||| ||||||    
T  29223202 ttttaccatttatgctttacatgcctgattctacccaatttatg 29223245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 162 - 305
Target Start/End: Original strand, 29336401 - 29336544
Alignment:
Q  162 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 261  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29336401 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 29336500  T
Q  262 tttcaccatttatgctttacatgcctgattctacccattttatg 305  Q
    ||| ||||||||||||||||||||||||||||||||| ||||||    
T  29336501 ttttaccatttatgctttacatgcctgattctacccaatttatg 29336544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 167 - 305
Target Start/End: Complemental strand, 8684209 - 8684070
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgta-ttttc 265  Q
    |||||||||||||||| |||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||     
T  8684209 aagtgctcaaaagtaaaatatttcatgtgttaacttaggaaaattagtgacttgttttgcaagttatctaaggaaaagctaccgtttgagtgtatttttt 8684110  T
Q  266 accatttatgctttacatgcctgattctacccattttatg 305  Q
    |||||||||||||||||| |||||||||||||| ||||||    
T  8684109 accatttatgctttacatacctgattctacccaatttatg 8684070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 162 - 303
Target Start/End: Original strand, 32522383 - 32522515
Alignment:
Q  162 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 261  Q
    |||| ||||||||||||||||||||||||||||| ||| ||||         |||||||||||||||||||||||||||||||||| |||||||||||||    
T  32522383 ttgataagtgctcaaaagtaacatattttatgtgttaatttag---------tgacttgttttgcaagttatctaaggaaaagctatcatttgagtgtat 32522473  T
Q  262 tttcaccatttatgctttacatgcctgattctacccatttta 303  Q
    ||  ||||||||||||||||||||||||||||||||| ||||    
T  32522474 ttataccatttatgctttacatgcctgattctacccaattta 32522515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 167 - 305
Target Start/End: Complemental strand, 36668607 - 36668470
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttca 266  Q
    ||||||||||||| ||||||||||||||| |||  ||||||  |||||| ||||||||||||||||||||||||||||||| || |||  || ||||| |    
T  36668607 aagtgctcaaaagcaacatattttatgtgttaatctaggcattttagtggcttgttttgcaagttatctaaggaaaagctatcaattg-ttgcattttta 36668509  T
Q  267 ccatttatgctttacatgcctgattctacccattttatg 305  Q
    ||||||||||||||||||||||||| | |||| ||||||    
T  36668508 ccatttatgctttacatgcctgattttgcccaatttatg 36668470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 29226728 - 29226794
Alignment:
Q  162 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaa 228  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  29226728 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaa 29226794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 162 - 228
Target Start/End: Original strand, 29340027 - 29340093
Alignment:
Q  162 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaa 228  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  29340027 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaa 29340093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 287
Target Start/End: Original strand, 27256908 - 27257032
Alignment:
Q  162 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 261  Q
    |||| |||||||||||||| | ||||||  | || ||| |||||||  ||||||||||||| | ||||||||||| ||||||||| | |||| | || ||    
T  27256908 ttgataagtgctcaaaagtgatatatttcttatgttaatttaggcattttagtgacttgttctacaagttatctatggaaaagctccaatttta-tgcat 27257006  T
Q  262 tttcaccatttatgctttacatgcct 287  Q
    || |||||||||||||| | ||||||    
T  27257007 ttacaccatttatgcttcatatgcct 27257032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 246
Target Start/End: Original strand, 31757713 - 31757798
Alignment:
Q  162 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaag-ttatctaaggaaaagct 246  Q
    |||| |||||||||||||| | |||||| ||||| ||  |||||||  |||||||||||||||||||| ||||||| |||||||||    
T  31757713 ttgataagtgctcaaaagtgatatatttcatgtgttagtttaggcattttagtgacttgttttgcaagattatctatggaaaagct 31757798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 228
Target Start/End: Original strand, 29792577 - 29792636
Alignment:
Q  169 gtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaa 228  Q
    ||||||||||||||||||||||||||| |||  ||||||  ||||||||||||| |||||    
T  29792577 gtgctcaaaagtaacatattttatgtgttaatctaggcattttagtgacttgttctgcaa 29792636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 246
Target Start/End: Original strand, 40199502 - 40199582
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaag-ttatctaaggaaaagct 246  Q
    |||||||||||||| | |||||| ||||| ||  |||||||  |||||| ||||||||||||| ||||||| || ||||||    
T  40199502 aagtgctcaaaagtgatatatttcatgtgttagtttaggcattttagtgccttgttttgcaagattatctatggcaaagct 40199582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 161 - 305
Target Start/End: Complemental strand, 38122811 - 38122667
Alignment:
Q  161 cttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgta 260  Q
    ||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38122811 cttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgta 38122712  T
Q  261 ttttcaccatttatgctttacatgcctgattctacccattttatg 305  Q
     | | ||||||||||||||||||||||||||||||||| ||||||    
T  38122711 atattaccatttatgctttacatgcctgattctacccaatttatg 38122667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 167 - 305
Target Start/End: Complemental strand, 16833518 - 16833380
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttca 266  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |    
T  16833518 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgattgtattttta 16833419  T
Q  267 ccatttatgctttacatgcctgattctacccattttatg 305  Q
    |||||||||||||||||||||||||||| ||| ||||||    
T  16833418 ccatttatgctttacatgcctgattctatccaatttatg 16833380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 167 - 305
Target Start/End: Complemental strand, 12168944 - 12168806
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttca 266  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||| |    
T  12168944 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgatttgttttgcaagttatctaaggaaaagctaccatttgagtgcaatttta 12168845  T
Q  267 ccatttatgctttacatgcctgattctacccattttatg 305  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  12168844 ccatttatgctttacatgcctgattctacccaatttatg 12168806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 167 - 305
Target Start/End: Complemental strand, 33492963 - 33492826
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttca 266  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |    
T  33492963 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaatttta 33492864  T
Q  267 ccatttatgctttacatgcctgattctacccattttatg 305  Q
    ||||||||||||| |||||||||||||||||| ||||||    
T  33492863 ccatttatgcttt-catgcctgattctacccaatttatg 33492826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 170 - 305
Target Start/End: Complemental strand, 13218800 - 13218665
Alignment:
Q  170 tgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttcacca 269  Q
    ||||||||| |||||||||| ||||| |||  |||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||    
T  13218800 tgctcaaaactaacatatttcatgtgttaatctaggtaatttagtgacttgttttgaaagttatctaaggaaaagctaccatttgagtgtatttatacca 13218701  T
Q  270 tttatgctttacatgcctgattctacccattttatg 305  Q
    ||||||||||||||||||||||||||||| ||||||    
T  13218700 tttatgctttacatgcctgattctacccaatttatg 13218665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 167 - 280
Target Start/End: Original strand, 39453350 - 39453462
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttca 266  Q
    |||||||||||||||| |||| ||||||| ||| ||||| |  |||||||||||||||||||||||||||||||||| ||||||||||  |||| |||      
T  39453350 aagtgctcaaaagtaatatatgttatgtgttaatttaggtattttagtgacttgttttgcaagttatctaaggaaaaactaccatttg-ttgtaattttg 39453448  T
Q  267 ccatttatgcttta 280  Q
    ||||||||||||||    
T  39453449 ccatttatgcttta 39453462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 167 - 285
Target Start/End: Original strand, 25242410 - 25242528
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttca 266  Q
    |||||||||||| ||||||||| |||||| ||| |||||||  ||| ||||||||| ||||||||||||||||||||||||| |||   |  | |||| |    
T  25242410 aagtgctcaaaactaacatattctatgtgttaatttaggcattttaatgacttgttctgcaagttatctaaggaaaagctactattgttgcattttttta 25242509  T
Q  267 ccatttatgctttacatgc 285  Q
    |||||||||||||| ||||    
T  25242510 ccatttatgctttaaatgc 25242528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 167 - 279
Target Start/End: Original strand, 16129004 - 16129115
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttca 266  Q
    ||||||||||||||| ||| ||| ||||| |||  ||||||  ||| |||||||||||||||||||||||||||||||| | ||||||  |||| ||| |    
T  16129004 aagtgctcaaaagtaccatctttcatgtgttaaaataggcattttaatgacttgttttgcaagttatctaaggaaaagcaatcatttg-ttgtaatttga 16129102  T
Q  267 ccatttatgcttt 279  Q
    |||||||||||||    
T  16129103 ccatttatgcttt 16129115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 167 - 295
Target Start/End: Original strand, 13829598 - 13829725
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttca 266  Q
    ||||||||||| |||| |||||| ||||| ||| ||| |||  ||||| ||||||  | |||||||||| |||||||||||||| || | |||| ||| |    
T  13829598 aagtgctcaaaggtaatatatttcatgtgttaaattatgcattttagtaacttgtcctacaagttatctgaggaaaagctaccaatt-attgtactttta 13829696  T
Q  267 ccatttatgctttacatgcctgattctac 295  Q
    | |||| ||||||||||||||||||||||    
T  13829697 ctatttgtgctttacatgcctgattctac 13829725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 255
Target Start/End: Original strand, 7062711 - 7062765
Alignment:
Q  201 ttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttga 255  Q
    |||||||  ||||| |||||||||||||||||||||| ||||| |||| ||||||    
T  7062711 ttaggcactttagttacttgttttgcaagttatctaaagaaaaactacaatttga 7062765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 255
Target Start/End: Complemental strand, 13249963 - 13249909
Alignment:
Q  201 ttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttga 255  Q
    |||||||  ||||| ||||||||| |||||||| |||||||||||||| ||||||    
T  13249963 ttaggcactttagttacttgttttacaagttatttaaggaaaagctacaatttga 13249909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 243
Target Start/End: Complemental strand, 432945 - 432869
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaa 243  Q
    |||||||||||||| | ||||||  | || ||| |||||||  ||||||||||||| | ||||||||||| ||||||    
T  432945 aagtgctcaaaagtgatatatttcttatgttaatttaggcattttagtgacttgttctacaagttatctatggaaaa 432869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 116; Significance: 5e-59; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 162 - 305
Target Start/End: Original strand, 3587788 - 3587931
Alignment:
Q  162 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 261  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  3587788 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaa 3587887  T
Q  262 tttcaccatttatgctttacatgcctgattctacccattttatg 305  Q
    ||| ||||||||||||||||||||||||||||||||| ||||||    
T  3587888 ttttaccatttatgctttacatgcctgattctacccaatttatg 3587931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 167 - 305
Target Start/End: Complemental strand, 27031555 - 27031417
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttca 266  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |    
T  27031555 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatatta 27031456  T
Q  267 ccatttatgctttacatgcctgattctacccattttatg 305  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  27031455 ccatttatgctttacatgcctgattctacccaatttatg 27031417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 167 - 296
Target Start/End: Complemental strand, 10407718 - 10407589
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttca 266  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  10407718 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatttta 10407619  T
Q  267 ccatttatgctttacatgcctgattctacc 296  Q
    ||||||||||||||||||||||||||||||    
T  10407618 ccatttatgctttacatgcctgattctacc 10407589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 161 - 305
Target Start/End: Complemental strand, 4755632 - 4755488
Alignment:
Q  161 cttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgta 260  Q
    ||||| ||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4755632 cttgataagtgctcaaaagtaacatatttcatgtgttaaattaggcaaattagtgacttgttttgcaagttatctaaggaaaagttaccatttgagtgta 4755533  T
Q  261 ttttcaccatttatgctttacatgcctgattctacccattttatg 305  Q
    |||| ||||||||||| ||||||||||||||||||||| ||||||    
T  4755532 tttttaccatttatgccttacatgcctgattctacccaatttatg 4755488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 167 - 305
Target Start/End: Complemental strand, 52045651 - 52045513
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttca 266  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  52045651 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaatttgtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatttta 52045552  T
Q  267 ccatttatgctttacatgcctgattctacccattttatg 305  Q
    |||||||||||||||||||||||||||| ||| ||||||    
T  52045551 ccatttatgctttacatgcctgattctagccaatttatg 52045513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 167 - 305
Target Start/End: Complemental strand, 52308761 - 52308623
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttca 266  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |    
T  52308761 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgctttgcaagttatctaaggaaaagctaccatttgagtgtaatttta 52308662  T
Q  267 ccatttatgctttacatgcctgattctacccattttatg 305  Q
    |||||||||||||||||| ||||||||||||| ||||||    
T  52308661 ccatttatgctttacatgtctgattctacccaatttatg 52308623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 157 - 305
Target Start/End: Complemental strand, 7653998 - 7653851
Alignment:
Q  157 gatgcttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgag 256  Q
    |||| |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7653998 gatgattgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgag 7653899  T
Q  257 tgtattttcaccatttatgctttacatgcctgattctacccattttatg 305  Q
    || | ||| |||||||||||||| |||||||||||||||||| ||||||    
T  7653898 tgcaattttaccatttatgcttt-catgcctgattctacccaatttatg 7653851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 162 - 305
Target Start/End: Original strand, 8614913 - 8615055
Alignment:
Q  162 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 261  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |     
T  8614913 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttt-gcaagttatctaaggaaaagctaccatttgagtgcaa 8615011  T
Q  262 tttcaccatttatgctttacatgcctgattctacccattttatg 305  Q
    ||| ||||||||||||||||||||||||||||||||| ||||||    
T  8615012 ttttaccatttatgctttacatgcctgattctacccaatttatg 8615055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 153 - 301
Target Start/End: Complemental strand, 36470211 - 36470063
Alignment:
Q  153 gcttgatgcttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatt 252  Q
    |||||||| |||| ||||||||||||||| ||||||| ||||| |||  ||||||| ||||||| ||||||||||||||||| |||||||||||||||||    
T  36470211 gcttgatgtttgataagtgctcaaaagtaccatatttaatgtgttaatctaggcaatttagtgatttgttttgcaagttatccaaggaaaagctaccatt 36470112  T
Q  253 tgagtgtattttcaccatttatgctttacatgcctgattctacccattt 301  Q
    |||||||||||  |||| |||||||||||||||||||||||||| ||||    
T  36470111 tgagtgtatttataccaattatgctttacatgcctgattctaccaattt 36470063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 167 - 272
Target Start/End: Complemental strand, 11263703 - 11263597
Alignment:
Q  167 aagtgctcaaaa-gtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttc 265  Q
    |||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||     
T  11263703 aagtgctcaaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggtaacgctagcatttgagtgtattttt 11263604  T
Q  266 accattt 272  Q
    |||||||    
T  11263603 accattt 11263597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 167 - 290
Target Start/End: Original strand, 33247302 - 33247424
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttca 266  Q
    ||||||||||||||||||||||||||||| |||  ||||||  ||||||||||||| ||||||||||||||||||||||||| |  |  ||||  ||| |    
T  33247302 aagtgctcaaaagtaacatattttatgtgttaatctaggcattttagtgacttgttctgcaagttatctaaggaaaagctactaaat-tgtgttctttta 33247400  T
Q  267 ccatttatgctttacatgcctgat 290  Q
    ||||||||||||||||||||||||    
T  33247401 ccatttatgctttacatgcctgat 33247424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 25804553 - 25804585
Alignment:
Q  214 tgacttgttttgcaagttatctaaggaaaagct 246  Q
    ||||||||||||||||||||||| |||||||||    
T  25804553 tgacttgttttgcaagttatctatggaaaagct 25804585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 167 - 305
Target Start/End: Original strand, 27347440 - 27347578
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttca 266  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  27347440 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatttta 27347539  T
Q  267 ccatttatgctttacatgcctgattctacccattttatg 305  Q
    |||||||||||||||||||||||||||| ||| ||||||    
T  27347540 ccatttatgctttacatgcctgattctatccaatttatg 27347578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 162 - 305
Target Start/End: Original strand, 27353515 - 27353658
Alignment:
Q  162 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 261  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |     
T  27353515 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctatcatttgagtgcaa 27353614  T
Q  262 tttcaccatttatgctttacatgcctgattctacccattttatg 305  Q
    ||| ||||||||||||||||||||||||||||||||| ||||||    
T  27353615 ttttaccatttatgctttacatgcctgattctacccaatttatg 27353658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 162 - 305
Target Start/End: Complemental strand, 28926917 - 28926774
Alignment:
Q  162 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 261  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |     
T  28926917 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgactttttttgcaagttatctaaggaaaagctaccatttgagtgcaa 28926818  T
Q  262 tttcaccatttatgctttacatgcctgattctacccattttatg 305  Q
    ||| ||||||||||||||||||||||||||||||||| ||||||    
T  28926817 ttttaccatttatgctttacatgcctgattctacccaatttatg 28926774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 167 - 297
Target Start/End: Original strand, 3298195 - 3298325
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttca 266  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |    
T  3298195 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtttattttta 3298294  T
Q  267 ccatttatgctttacatgcctgattctaccc 297  Q
    |||||||||||||||||| ||||||||||||    
T  3298295 ccatttatgctttacatgtctgattctaccc 3298325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 167 - 305
Target Start/End: Original strand, 22179903 - 22180041
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttca 266  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||| |    
T  22179903 aagtgctcaaaagtaacatattttatgcgttaacttaggcaaattagtgacttgtttcgcaagttatctaaggaaaatctaccatttgagtgtaatttta 22180002  T
Q  267 ccatttatgctttacatgcctgattctacccattttatg 305  Q
    ||||||||||||||||||||||||||||| || ||||||    
T  22180003 ccatttatgctttacatgcctgattctactcaatttatg 22180041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 161 - 305
Target Start/End: Complemental strand, 8744142 - 8743998
Alignment:
Q  161 cttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgta 260  Q
    ||||| ||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8744142 cttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattattgacttgttttgcaagttatctaaggaaaagctaccatttgagtgta 8744043  T
Q  261 ttttcaccatttatgctttacatgcctgattctacccattttatg 305  Q
     | | |  |||||||||||||||||||||||||||||| ||||||    
T  8744042 atattattatttatgctttacatgcctgattctacccaatttatg 8743998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 167 - 305
Target Start/End: Complemental strand, 9068935 - 9068797
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttca 266  Q
    |||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |  || |    
T  9068935 aagtgcccaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatccaaggaaaagctaccatttgagtgcaacttta 9068836  T
Q  267 ccatttatgctttacatgcctgattctacccattttatg 305  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  9068835 ccatttatgctttacatgcctgattctacccaatttatg 9068797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 162 - 305
Target Start/End: Complemental strand, 36737633 - 36737491
Alignment:
Q  162 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 261  Q
    |||| ||||||| ||||||| ||||||||||||| |||  ||||||  || |||||||||| ||||||||||||||||||| |||| || |||  |||||    
T  36737633 ttgataagtgctaaaaagtaccatattttatgtgttaatctaggcattttggtgacttgttctgcaagttatctaaggaaaggctatcaattg-ttgtat 36737535  T
Q  262 tttcaccatttatgctttacatgcctgattctacccattttatg 305  Q
     |  ||||||||||||||||||||||||||||||||| ||||||    
T  36737534 ctataccatttatgctttacatgcctgattctacccaatttatg 36737491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 167 - 298
Target Start/End: Original strand, 1606596 - 1606726
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttca 266  Q
    |||||||||||||||| |||||| ||||| ||| |||||||  ||||||||||||| ||||||||||||||| |||||||  || |||  |||| ||| |    
T  1606596 aagtgctcaaaagtaatatatttcatgtgttaatttaggcattttagtgacttgttctgcaagttatctaagaaaaagctttcaattg-ttgtactttta 1606694  T
Q  267 ccatttatgctttacatgcctgattctaccca 298  Q
    ||||||||| |||||||| |||||||||||||    
T  1606695 ccatttatgttttacatgtctgattctaccca 1606726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 167 - 238
Target Start/End: Original strand, 16957901 - 16957972
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaag 238  Q
    ||||||||||||||||||||||||||| | |||  |||||| ||||||||||||||||||||||||||||||    
T  16957901 aagtgctcaaaagtaacatattttatgcgttaatctaggcatattagtgacttgttttgcaagttatctaag 16957972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 28369584 - 28369642
Alignment:
Q  162 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttg 220  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||    
T  28369584 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggtaaattagtgacttg 28369642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 162 - 246
Target Start/End: Complemental strand, 4435621 - 4435537
Alignment:
Q  162 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagct 246  Q
    |||| |||||||||||||| | ||||||  |||| ||| |||||||  ||||||| ||||||||||||||||||| |||||||||    
T  4435621 ttgataagtgctcaaaagtgatatatttcttgtgttaatttaggcactttagtgatttgttttgcaagttatctatggaaaagct 4435537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 279
Target Start/End: Original strand, 24040006 - 24040117
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttca 266  Q
    |||||||||||||||  || ||| ||||| |||  ||||||  |||||||||||||||| ||||||| ||||||||||| | ||||||  |||| ||| |    
T  24040006 aagtgctcaaaagtattatctttcatgtgttaaaataggcattttagtgacttgttttgtaagttatataaggaaaagcaatcatttg-ttgtaatttga 24040104  T
Q  267 ccatttatgcttt 279  Q
    |||||||||||||    
T  24040105 ccatttatgcttt 24040117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 167 - 246
Target Start/End: Original strand, 21687382 - 21687462
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaag-ttatctaaggaaaagct 246  Q
    |||||||||||||| | |||||| ||||| ||  |||||||  |||||||||||||||||||| ||||||| |||||||||    
T  21687382 aagtgctcaaaagtgatatatttcatgtgttagtttaggcattttagtgacttgttttgcaagattatctatggaaaagct 21687462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 167 - 246
Target Start/End: Original strand, 21691706 - 21691786
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaag-ttatctaaggaaaagct 246  Q
    |||||||||||||| | |||||| ||||| ||  |||||||  |||||||||||||||||||| ||||||| |||||||||    
T  21691706 aagtgctcaaaagtgatatatttcatgtgttagtttaggcattttagtgacttgttttgcaagattatctatggaaaagct 21691786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 167 - 305
Target Start/End: Original strand, 22817832 - 22817970
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttca 266  Q
    ||||||||||||||||||||||| | ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  22817832 aagtgctcaaaagtaacatatttcaggtgttaacttaggcaaaatagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 22817931  T
Q  267 ccatttatgctttacatgcctgattctacccattttatg 305  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  22817932 ccatttatgctttacatgcctgattctacccaatttatg 22817970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 160 - 305
Target Start/End: Original strand, 7143044 - 7143189
Alignment:
Q  160 gcttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgt 259  Q
    |||||| ||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7143044 gcttgataagtgctcaaaagtaacatatttcatgtgttaacttaggaaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgt 7143143  T
Q  260 attttcaccatttatgctttacatgcctgattctacccattttatg 305  Q
    | | | ||||||||||||||||||||||||||||||||| ||||||    
T  7143144 aatattaccatttatgctttacatgcctgattctacccaatttatg 7143189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 161 - 305
Target Start/End: Original strand, 23794481 - 23794625
Alignment:
Q  161 cttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgta 260  Q
    ||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  23794481 cttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgca 23794580  T
Q  261 ttttcaccatttatgctttacatgcctgattctacccattttatg 305  Q
     ||| ||||||||| ||||||||||||||||||||||| ||||||    
T  23794581 attttaccatttattctttacatgcctgattctacccaatttatg 23794625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 167 - 305
Target Start/End: Complemental strand, 10347074 - 10346936
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttca 266  Q
    ||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |    
T  10347074 aagtgctcaaaagtaacatttttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaatttta 10346975  T
Q  267 ccatttatgctttacatgcctgattctacccattttatg 305  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  10346974 ccatttatgctttacatgcctgattctacccaatttatg 10346936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 167 - 297
Target Start/End: Complemental strand, 31159044 - 31158914
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttca 266  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |    
T  31159044 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaatttta 31158945  T
Q  267 ccatttatgctttacatgcctgattctaccc 297  Q
    |||||||||||||||||||||||||||||||    
T  31158944 ccatttatgctttacatgcctgattctaccc 31158914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 162 - 305
Target Start/End: Original strand, 2630809 - 2630951
Alignment:
Q  162 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 261  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  2630809 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaa 2630908  T
Q  262 tttcaccatttatgctttacatgcctgattctacccattttatg 305  Q
    ||| |||||||||||||| |||||||||||||||||| ||||||    
T  2630909 ttttaccatttatgcttt-catgcctgattctacccaatttatg 2630951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 167 - 305
Target Start/End: Original strand, 12183259 - 12183397
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttca 266  Q
    ||||||||||||||||||||||| ||||| ||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |    
T  12183259 aagtgctcaaaagtaacatatttcatgtgttaacttatgtaaattagtgacctgttttgcaagttatctaaggaaaagctaccatttgagtgtattttta 12183358  T
Q  267 ccatttatgctttacatgcctgattctacccattttatg 305  Q
    |||||||||||| ||||||||||||||||||| ||||||    
T  12183359 ccatttatgcttcacatgcctgattctacccaatttatg 12183397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 167 - 305
Target Start/End: Complemental strand, 22322652 - 22322514
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttca 266  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  22322652 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagcgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatttta 22322553  T
Q  267 ccatttatgctttacatgcctgattctacccattttatg 305  Q
    ||||||||||||||||| ||| |||||||||| ||||||    
T  22322552 ccatttatgctttacatacctaattctacccaatttatg 22322514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 162 - 305
Target Start/End: Complemental strand, 19473033 - 19472890
Alignment:
Q  162 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 261  Q
    |||| ||||||| ||||||||||||||| ||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  19473033 ttgataagtgcttaaaagtaacatatttcatgtgttaatttaggcaaattagtgacttattttgcaagttatctaaggaaaagctaccttttgagtgtat 19472934  T
Q  262 tttcaccatttatgctttacatgcctgattctacccattttatg 305  Q
    ||| |||||||||||||||||||||| |||||||||| ||||||    
T  19472933 ttttaccatttatgctttacatgcctaattctacccaatttatg 19472890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 167 - 305
Target Start/End: Complemental strand, 45501400 - 45501261
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgactt-gttttgcaagttatctaaggaaaagctaccatttgagtgtattttc 265  Q
    ||||||||||||||||||||||| |||||||||  ||||||| |||||||||| |||||| || |||||||||||||||||| |||||||||||||||      
T  45501400 aagtgctcaaaagtaacatatttcatgtgctaatctaggcaatttagtgacttagttttgaaatttatctaaggaaaagctatcatttgagtgtatttat 45501301  T
Q  266 accatttatgctttacatgcctgattctacccattttatg 305  Q
    |||||||||| |||||||||||||||||||||| ||||||    
T  45501300 accatttatgttttacatgcctgattctacccaatttatg 45501261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 167 - 305
Target Start/End: Original strand, 2477074 - 2477212
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttca 266  Q
    ||||| ||||||||||||||||||||| | |||| ||||||  ||||||||||||||||||| ||||||||| ||||||||| | ||||||||||||| |    
T  2477074 aagtgatcaaaagtaacatattttatgcgttaacctaggcattttagtgacttgttttgcaacttatctaagaaaaagctactaattgagtgtattttta 2477173  T
Q  267 ccatttatgctttacatgcctgattctacccattttatg 305  Q
    ||||||||| |||||||||||||||||||| | ||||||    
T  2477174 ccatttatgttttacatgcctgattctacctaatttatg 2477212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 162 - 305
Target Start/End: Complemental strand, 2798314 - 2798171
Alignment:
Q  162 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 261  Q
    |||| ||||| |||||| |||||||||||||||| |||  ||||||| ||||||||||||| |||||||||||||||||||| | | |||||||||||||    
T  2798314 ttgataagtgttcaaaaataacatattttatgtgttaatctaggcaatttagtgacttgttctgcaagttatctaaggaaaaacaatcatttgagtgtat 2798215  T
Q  262 tttcaccatttatgctttacatgcctgattctacccattttatg 305  Q
    ||  |||||||||||||||||| |||||||||| ||| ||||||    
T  2798214 ttataccatttatgctttacatacctgattctatccaatttatg 2798171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 167 - 305
Target Start/End: Original strand, 31878015 - 31878153
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttca 266  Q
    ||||||| |||  ||| |||||||||||| |||  |||| || |||||||||| |  ||||||||||||| |||||||||| |||||||||||||||  |    
T  31878015 aagtgcttaaagttaatatattttatgtgttaatataggtaatttagtgacttatcctgcaagttatctagggaaaagctatcatttgagtgtatttata 31878114  T
Q  267 ccatttatgctttacatgcctgattctacccattttatg 305  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  31878115 ccatttatgctttacatgcctgattctacccaatttatg 31878153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 167 - 247
Target Start/End: Complemental strand, 31001456 - 31001376
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagcta 247  Q
    ||||||||||||||||||||||||||||| |||  ||||||  ||||||||||||| | ||||||||||||| ||||||||    
T  31001456 aagtgctcaaaagtaacatattttatgtgttaatctaggcattttagtgacttgttctccaagttatctaagaaaaagcta 31001376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 176 - 248
Target Start/End: Complemental strand, 8139920 - 8139848
Alignment:
Q  176 aaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctac 248  Q
    ||||||| |||||| ||||| ||  |||||||  |||||||||| ||||||| ||||||||||||||||||||    
T  8139920 aaagtaatatatttcatgtgttattttaggcactttagtgacttattttgcaggttatctaaggaaaagctac 8139848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 31665343 - 31665265
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagc 245  Q
    |||||||||||||||| |||||| ||||| |||  || |||    ||||||||||| ||||||||||||||||||||||    
T  31665343 aagtgctcaaaagtaatatatttcatgtgttaaaatatgcattacagtgacttgttatgcaagttatctaaggaaaagc 31665265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 255
Target Start/End: Complemental strand, 24169489 - 24169396
Alignment:
Q  162 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttga 255  Q
    |||| |||||||||||||| | |||||| ||||  ||  |||||||  ||||||| |||||||||||||||  |||||||||| ||| ||||||    
T  24169489 ttgataagtgctcaaaagtgatatatttcatgtattattttaggcactttagtgatttgttttgcaagttacttaaggaaaagttacaatttga 24169396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 255
Target Start/End: Original strand, 20403074 - 20403168
Alignment:
Q  162 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaa-ggaaaagctaccatttga 255  Q
    |||| |||||||||||||| | ||||||  |||| ||| |||||||  ||||||| ||||||||||| |||  ||| ||||||||||| ||||||    
T  20403074 ttgataagtgctcaaaagtgatatatttcttgtgttaatttaggcactttagtgatttgttttgcaaattacttaagggaaaagctacaatttga 20403168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 167 - 305
Target Start/End: Complemental strand, 26511269 - 26511131
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttca 266  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |    
T  26511269 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtataatttta 26511170  T
Q  267 ccatttatgctttacatgcctgattctacccattttatg 305  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  26511169 ccatttatgctttacatgcctgattctacccaatttatg 26511131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 167 - 305
Target Start/End: Complemental strand, 26516385 - 26516247
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttca 266  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |    
T  26516385 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtataatttta 26516286  T
Q  267 ccatttatgctttacatgcctgattctacccattttatg 305  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  26516285 ccatttatgctttacatgcctgattctacccaatttatg 26516247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 162 - 305
Target Start/End: Original strand, 34005893 - 34006036
Alignment:
Q  162 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 261  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |     
T  34005893 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaatgctaccatttgagtgcaa 34005992  T
Q  262 tttcaccatttatgctttacatgcctgattctacccattttatg 305  Q
    ||| ||||||||||||||||||||||||||||| ||| ||||||    
T  34005993 ttttaccatttatgctttacatgcctgattctatccaatttatg 34006036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 167 - 297
Target Start/End: Original strand, 3538441 - 3538571
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttca 266  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||| |    
T  3538441 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgactcgttttgcaagttatctaaggaaaagctaccatttgagtgcaatttta 3538540  T
Q  267 ccatttatgctttacatgcctgattctaccc 297  Q
    |||||||||||||||||||||||||||||||    
T  3538541 ccatttatgctttacatgcctgattctaccc 3538571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 167 - 305
Target Start/End: Complemental strand, 9934753 - 9934615
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttca 266  Q
    ||||||| ||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  9934753 aagtgcttaaaagtaacatatttcatgtgttaacttaggtaaattagtgacttgttttgcaagttatctaaggaaaaactaccatttgagtgtattttta 9934654  T
Q  267 ccatttatgctttacatgcctgattctacccattttatg 305  Q
    |||||||||||||||||||||||||||| ||| ||||||    
T  9934653 ccatttatgctttacatgcctgattctatccaatttatg 9934615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 162 - 305
Target Start/End: Complemental strand, 24161997 - 24161855
Alignment:
Q  162 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgta- 260  Q
    |||| |||||||||||||||||||  |||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||     
T  24161997 ttgataagtgctcaaaagtaacat--tttatgtgttaacttaggcaaattagagacttgttttgcaagttatataaggaaaagctaccatttgagtgtat 24161900  T
Q  261 ttttcaccatttatgctttacatgcctgattctacccattttatg 305  Q
    |||| ||||||||||||||||||||||||||||| ||| ||||||    
T  24161899 tttttaccatttatgctttacatgcctgattctatccaatttatg 24161855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 170 - 295
Target Start/End: Original strand, 26603622 - 26603746
Alignment:
Q  170 tgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttcacca 269  Q
    ||||||||||| | |||||| ||||| ||| |||||||  ||||||||||||||||||||||||||||||||||  ||||| |||  |||| ||| ||||    
T  26603622 tgctcaaaagtgatatatttcatgtgttaatttaggcattttagtgacttgttttgcaagttatctaaggaaaatgtaccaattg-ttgtacttttacca 26603720  T
Q  270 tttatgctttacatgcctgattctac 295  Q
    ||||||||||||||||||||||||||    
T  26603721 tttatgctttacatgcctgattctac 26603746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 167 - 305
Target Start/End: Original strand, 31131280 - 31131417
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttca 266  Q
    ||||||| ||||||||||||||||||||| |||  ||||||  |||||||||||||||||||||||||||||||||| ||| || |||  |||||||  |    
T  31131280 aagtgcttaaaagtaacatattttatgtgttaatctaggcattttagtgacttgttttgcaagttatctaaggaaaatctatcaattg-ttgtatttata 31131378  T
Q  267 ccatttatgctttacatgcctgattctacccattttatg 305  Q
    ||||||||||||||  || || ||||| |||| ||||||    
T  31131379 ccatttatgctttatgtgtctaattctgcccaatttatg 31131417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 210 - 305
Target Start/End: Original strand, 15641761 - 15641855
Alignment:
Q  210 ttagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttcaccatttatgctttacatgcctgattctacccattttatg 305  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||  |||| ||| ||||||||||||||||||||||||||| | || |||||||    
T  15641761 ttagtgacttgttctgcaagttatctaaggaaaagctaccaattg-ttgtacttttaccatttatgctttacatgcctgattccaacccttttatg 15641855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 255
Target Start/End: Original strand, 2298290 - 2298378
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttga 255  Q
    ||||| |||||||| | |||||| ||||| ||  |||| ||  |||||||||||||||||||||||||||||||||| |||| ||||||    
T  2298290 aagtgttcaaaagtgatatatttcatgtgttattttagacactttagtgacttgttttgcaagttatctaaggaaaaactacaatttga 2298378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 302
Target Start/End: Complemental strand, 5671804 - 5671670
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttca 266  Q
    |||||||||||||| | ||||||  | || ||| |||||||  ||||||||||||| | ||||||||||| ||||||||| | |||| | || |||| ||    
T  5671804 aagtgctcaaaagtgatatatttcttatgttaatttaggcattttagtgacttgttctacaagttatctatggaaaagctccaatttta-tgcatttaca 5671706  T
Q  267 ccatttatgctttacatgcctgattctacccatttt 302  Q
    |||||||||||| | |||||| | ||||||| ||||    
T  5671705 ccatttatgcttcatatgccttactctacccttttt 5671670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 302
Target Start/End: Original strand, 24878410 - 24878544
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttca 266  Q
    |||||||||||||| | ||||||  | || ||  |||||||  ||||||||||||| | ||||||||||| ||||||||| | |||| | || |||| ||    
T  24878410 aagtgctcaaaagtgatatatttcttatgttagtttaggcattttagtgacttgttctacaagttatctatggaaaagctccaatttta-tgcatttaca 24878508  T
Q  267 ccatttatgctttacatgcctgattctacccatttt 302  Q
    |||||||||||| | |||||| | ||||||| ||||    
T  24878509 ccatttatgcttcatatgccttactctacccttttt 24878544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 255
Target Start/End: Complemental strand, 18751395 - 18751341
Alignment:
Q  201 ttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttga 255  Q
    |||||||  ||||| |||||||||||||||||| ||||||||| |||| ||||||    
T  18751395 ttaggcactttagttacttgttttgcaagttatttaaggaaaaactacaatttga 18751341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 162 - 297
Target Start/End: Original strand, 174033 - 174168
Alignment:
Q  162 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 261  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     
T  174033 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgcaa 174132  T
Q  262 tttcaccatttatgctttacatgcctgattctaccc 297  Q
    ||| ||||||||||||||||||||||||||||||||    
T  174133 ttttaccatttatgctttacatgcctgattctaccc 174168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 162 - 297
Target Start/End: Original strand, 185191 - 185326
Alignment:
Q  162 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 261  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||| |     
T  185191 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggaaaattaatgacttgttttgcaagttatataaggaaaagctaccatttgagtgcaa 185290  T
Q  262 tttcaccatttatgctttacatgcctgattctaccc 297  Q
    ||| ||||||||||||||||||||||||||||||||    
T  185291 ttttaccatttatgctttacatgcctgattctaccc 185326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 167 - 305
Target Start/End: Complemental strand, 354508 - 354370
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttca 266  Q
    ||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |    
T  354508 aagtgctcaaaagtaacatatttcatgtgttaacttagacaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtaatatta 354409  T
Q  267 ccatttatgctttacatgcctgattctacccattttatg 305  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  354408 ccatttatgctttacatgcctgattctacccaatttatg 354370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1494 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: scaffold1494
Description:

Target: scaffold1494; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 162 - 305
Target Start/End: Original strand, 954 - 1096
Alignment:
Q  162 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 261  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |     
T  954 ttgataagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttt-gcaagttatctaaggaaaagctaccatttgagtgcaa 1052  T
Q  262 tttcaccatttatgctttacatgcctgattctacccattttatg 305  Q
    ||| ||||||||||||||||||||||||||||||||| ||||||    
T  1053 ttttaccatttatgctttacatgcctgattctacccaatttatg 1096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 162 - 305
Target Start/End: Complemental strand, 117404 - 117261
Alignment:
Q  162 ttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtat 261  Q
    |||| ||||||||||||||||||||||| ||||| |||  ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |    
T  117404 ttgataagtgctcaaaagtaacatatttcatgtgttaatctaggcaatttagtgacttgttttgaaagttatctaaggaaaagctaccatttgagtgtgt 117305  T
Q  262 tttcaccatttatgctttacatgcctgattctacccattttatg 305  Q
    ||  ||||||||||||||||||| ||||||||||||| ||||||    
T  117304 ttataccatttatgctttacatgtctgattctacccaatttatg 117261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 167 - 305
Target Start/End: Complemental strand, 17241 - 17103
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttca 266  Q
    ||||||||||||||||||||||||||||| |||| |||||   |||||||||||||||||||||||||||||||||||| || |  ||| |||||||  |    
T  17241 aagtgctcaaaagtaacatattttatgtgttaacctaggcttgttagtgacttgttttgcaagttatctaaggaaaagccactaagtgattgtatttgta 17142  T
Q  267 ccatttatgctttacatgcctgattctacccattttatg 305  Q
    ||||||||||||||| ||| |||||||||||| ||||||    
T  17141 ccatttatgctttacgtgcttgattctacccaatttatg 17103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 167 - 253
Target Start/End: Complemental strand, 80008 - 79922
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccattt 253  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  80008 aagtgctcaaaagtaacatatttcatgtgttaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccattt 79922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0744 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0744
Description:

Target: scaffold0744; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 167 - 291
Target Start/End: Original strand, 1851 - 1974
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttca 266  Q
    ||||||||||||||||||||||||||||| ||| |||||||  ||||| ||||||| |||||||||||||||||||||||||||  |  ||||  ||| |    
T  1851 aagtgctcaaaagtaacatattttatgtgttaatttaggcattttagttacttgttctgcaagttatctaaggaaaagctaccaaat-tgtgttctttta 1949  T
Q  267 ccatttatgctttacatgcctgatt 291  Q
    |||||||||||||||||||||||||    
T  1950 ccatttatgctttacatgcctgatt 1974  T

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Target: scaffold0458 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0458
Description:

Target: scaffold0458; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 167 - 295
Target Start/End: Complemental strand, 10324 - 10197
Alignment:
Q  167 aagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaagctaccatttgagtgtattttca 266  Q
    |||||||||||||||| |||| ||||||| ||| ||||| |  |||||||||||||||||||||||||||||||||| ||||||||||  |||| |||      
T  10324 aagtgctcaaaagtaatatatgttatgtgttaatttaggtattttagtgacttgttttgcaagttatctaaggaaaaactaccatttg-ttgtaattttg 10226  T
Q  267 ccatttatgctttacatgcctgattctac 295  Q
    ||||||||||||||  ||||| |||||||    
T  10225 ccatttatgctttatgtgccttattctac 10197  T

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Target: scaffold0871 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0871
Description:

Target: scaffold0871; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 244
Target Start/End: Original strand, 4325 - 4408
Alignment:
Q  161 cttgaaaagtgctcaaaagtaacatattttatgtgctaacttaggcaaattagtgacttgttttgcaagttatctaaggaaaag 244  Q
    ||||| |||||||||||||| | | |||| ||||| || ||||||||  |||||||||  |||| ||||||||||| |||||||    
T  4325 cttgataagtgctcaaaagtgatagatttcatgtgttagcttaggcattttagtgactgattttacaagttatctatggaaaag 4408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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