View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8518A_low_129 (Length: 307)
Name: NF8518A_low_129
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_129 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 75 - 303
Target Start/End: Original strand, 36172627 - 36172856
Alignment:
| Q |
75 |
gcttagaagttagaataggtaatcatttgcaaaagatgtt-gtttttactcggttttatttgtccacttaagttcaattcattcatacattttctctgta |
173 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36172627 |
gcttagaagttagaataggtaatcatttgcaaaagatgtttgtttttactcggttttattggtccacttaagttcaattcattcatacattttctctgta |
36172726 |
T |
|
| Q |
174 |
caatccttcagctaattatgtgtggtcctgtcaaaaagaaaactaatttatgtgtggctaacgttccctctccctgcatgcttttgtgaatgaatgagac |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36172727 |
caatccttcagctaattatgtgtggtcctgtcaaaaagaaaactaatttatgtgtggctaaggttccctctccctgcatgcttttgtgaatgaatgagac |
36172826 |
T |
|
| Q |
274 |
ttcttcggtcataaagcattcatctcagtc |
303 |
Q |
| |
|
||||||||||||||||||||||| |||||| |
|
|
| T |
36172827 |
ttcttcggtcataaagcattcatgtcagtc |
36172856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 36172606 - 36172661
Alignment:
| Q |
19 |
attcattcattcatatgttttgcttagaagttaggataggtaatcatttgcaaaag |
74 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
36172606 |
attcattcattcatatgttttgcttagaagttagaataggtaatcatttgcaaaag |
36172661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University