View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8518A_low_133 (Length: 300)
Name: NF8518A_low_133
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8518A_low_133 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 64 - 288
Target Start/End: Original strand, 38448650 - 38448874
Alignment:
| Q |
64 |
tcatatttttaagtagagagatgcattcttgtgaataattcaagaaatttgatatggatgcctttttaactagatttctatgtcttatatacaataattt |
163 |
Q |
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| T |
38448650 |
tcatatttttaagtagagagatgcattcttgtgaataattcaagaaatttgatatggatgcctttttaactagatttctctgtcttatatacaataattt |
38448749 |
T |
|
| Q |
164 |
taccaaaaataagagaatcatcatgccgtgagactttcggtgtcaacttaagttaataattaaaaccaacacagtacacataccaactagaaatattgta |
263 |
Q |
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||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
38448750 |
tacgaaaaataagagaatcatcatgccgtgagacttttggtgttaacttaagttaataattaaaaccaacacagtacacataccaactagaaatattgca |
38448849 |
T |
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| Q |
264 |
actaaaacttatagattgttttatt |
288 |
Q |
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||||||||||||||||||||||||| |
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| T |
38448850 |
actaaaacttatagattgttttatt |
38448874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 44
Target Start/End: Original strand, 38448605 - 38448633
Alignment:
| Q |
16 |
atacacaaataatcgacatgtaaacaagc |
44 |
Q |
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| T |
38448605 |
atacacaaataatcgacatgtaaacaagc |
38448633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 7e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 64 - 276
Target Start/End: Complemental strand, 49859406 - 49859203
Alignment:
| Q |
64 |
tcatatttttaagtagagagatgcattcttgtgaataattcaagaaatttgatatggatgcctttttaactagatttctatgtcttatatacaataattt |
163 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||| ||||||||||||||| | |
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| T |
49859406 |
tcatatttttaagtagagagatgtattcttgtgaataattcaagaaatttgatatgaatgcc-ttttaacaagatttctatatcttatatacaataaata |
49859308 |
T |
|
| Q |
164 |
taccaaaaataagagaatcatcatgccgtgagactttcggtgtcaacttaagttaataattaaaaccaacacagtacacataccaactagaaatattgta |
263 |
Q |
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| ||||| ||||||||||| ||| | | |||||||| || ||||||||||||||||||| |||| | ||||||| ||| |||||||||||||| |
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| T |
49859307 |
ttacaaaa--aagagaatcattatgacat-agactttcagt-----tttaagttaataattaaaacaaacaaattacacatgccagctagaaatattgta |
49859216 |
T |
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| Q |
264 |
actaaaacttata |
276 |
Q |
| |
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||||||||||||| |
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| T |
49859215 |
actaaaacttata |
49859203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 44
Target Start/End: Complemental strand, 49859447 - 49859419
Alignment:
| Q |
16 |
atacacaaataatcgacatgtaaacaagc |
44 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
49859447 |
atacacaaataatcgacatgtaaacaagc |
49859419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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