View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8518A_low_136 (Length: 297)

Name: NF8518A_low_136
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8518A_low_136
NF8518A_low_136
[»] chr2 (17 HSPs)
chr2 (30-297)||(9292322-9292589)
chr2 (39-297)||(9357586-9357841)
chr2 (65-235)||(9283721-9283891)
chr2 (57-297)||(9316449-9316689)
chr2 (57-238)||(9329020-9329201)
chr2 (68-259)||(10353553-10353744)
chr2 (59-238)||(9321399-9321578)
chr2 (65-236)||(9060665-9060836)
chr2 (65-129)||(10336273-10336337)
chr2 (65-123)||(8573142-8573200)
chr2 (159-297)||(9275044-9275182)
chr2 (166-235)||(10372391-10372460)
chr2 (67-129)||(10372301-10372363)
chr2 (65-134)||(7115271-7115340)
chr2 (39-124)||(9274915-9275000)
chr2 (72-129)||(10348227-10348284)
chr2 (166-259)||(10348312-10348405)
[»] chr3 (1 HSPs)
chr3 (65-297)||(37462927-37463159)
[»] chr4 (1 HSPs)
chr4 (67-259)||(26575304-26575496)
[»] scaffold0667 (2 HSPs)
scaffold0667 (65-129)||(4912-4976)
scaffold0667 (177-297)||(5018-5138)
[»] chr8 (2 HSPs)
chr8 (65-127)||(41966362-41966424)
chr8 (179-235)||(41966254-41966310)
[»] chr1 (4 HSPs)
chr1 (66-127)||(29467429-29467489)
chr1 (66-124)||(29452955-29453013)
chr1 (66-123)||(29442970-29443027)
chr1 (70-127)||(29423702-29423759)


Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 30 - 297
Target Start/End: Original strand, 9292322 - 9292589
Alignment:
Q  30 acctgtggatcaaaagagtaatgtaggtcggctatccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcata 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9292322 acctgtggatcaaaagagtaatgtaggtcggctatccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcata 9292421  T
Q  130 cacctgcgcgatcaatgttttcagactcaagaatgttagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgt 229  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9292422 caccggcgcgatcaatgttttcagactcgagaatgttagggatagcaagagggagaaaagggataatccgatgtttatgagtgttagggttcaagactgt 9292521  T
Q  230 gatttcgttaggggcgtaaggatgcgtgaagcagatttggctattggaaatggcgaggaggccgttac 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9292522 gatttcgttaggggcgtaaggatgcgtgaagcagatttggctattggaaatggcgaggaggccgttac 9292589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 39 - 297
Target Start/End: Original strand, 9357586 - 9357841
Alignment:
Q  39 tcaaaagagtaatgtaggtcggctatccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgcgc 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||   |||    
T  9357586 tcaaaagagtaatgtaggtcggctatccaagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcatacac---cgc 9357682  T
Q  139 gatcaatgttttcagactcaagaatgttagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgtt 238  Q
      ||||||||   |||    |||||||||||||||| ||||||||| |||||||||||   ||||||| |  ||||| ||||| ||| || |||||||||    
T  9357683 cgtcaatgttgaaagatcggagaatgttagggataggaagagggaggaaagggataatgtgatgtttacggatgttatggttccagattgagatttcgtt 9357782  T
Q  239 aggggcgtaaggatgcgtgaagcagatttggctattggaaatggcgaggaggccgttac 297  Q
     | ||||| ||||||| ||||   ||||| || |||||| |||||||||||||||||||    
T  9357783 ggcggcgttaggatgcctgaaagcgatttcgccattggagatggcgaggaggccgttac 9357841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 65 - 235
Target Start/End: Complemental strand, 9283891 - 9283721
Alignment:
Q  65 ccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgcgcgatcaatgttttcagactcaagaatg 164  Q
    ||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||  |||| ||||||||||||||||| | ||||    
T  9283891 ccaagagattcggaggagtttgtaatcgccggttaaaggatcaaaaccgaagccgtgaatgcatacaccgccgcgttcaatgttttcagactccacaatg 9283792  T
Q  165 ttagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttc 235  Q
    |||||||||| ||||||||||||||||||||||| ||||||| | ||||||| |||| ||| |||||||||    
T  9283791 ttagggataggaagagggagaaaagggataatccaatgtttacgggtgttagtgttccagattgtgatttc 9283721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 57 - 297
Target Start/End: Original strand, 9316449 - 9316689
Alignment:
Q  57 tcggctatccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgcgcgatcaatgttttcagact 156  Q
    ||||| |||||||| |||||||||||||||||||| || ||| |||||||| ||||||||||||||||||||| |||  ||||||     || ||||| |    
T  9316449 tcggccatccaagaaattctgaggagtttgtaatcacctgttgatggatcaaaaccgaagccgtgaacgcatataccgccgcgattgggtttgtcagatt 9316548  T
Q  157 caagaatgttagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgt 256  Q
    ||||||||||||||||||||||||| || ||||||||||| | ||||||| | |||||||||||| ||| |||||||||||| | | ||||||||||| |    
T  9316549 caagaatgttagggatagcaagaggaaggaaagggataatacgatgtttacgggtgttagggttccagattgtgatttcgttggcgccgtaaggatgcat 9316648  T
Q  257 gaagcagatttggctattggaaatggcgaggaggccgttac 297  Q
    |||   |||||| | ||||||||||||||| ||||||||||    
T  9316649 gaaagcgatttgaccattggaaatggcgagaaggccgttac 9316689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 57 - 238
Target Start/End: Original strand, 9329020 - 9329201
Alignment:
Q  57 tcggctatccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgcgcgatcaatgttttcagact 156  Q
    ||||||||||||| ||||||||||||||||||||| |||| ||| |||||| ||||||| |||||||||||||       |||||  ||||| ||||| |    
T  9329020 tcggctatccaagcgattctgaggagtttgtaatcaccggataaaggatcaaaaccgaaaccgtgaacgcataaggagaagcgatggatgttgtcagatt 9329119  T
Q  157 caagaatgttagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgtt 238  Q
    ||||||||||||||||||||||||| || ||||||||||| | ||||||| | |||||||||||| ||| ||||||||||||    
T  9329120 caagaatgttagggatagcaagaggtaggaaagggataatacgatgtttacgggtgttagggttccagattgtgatttcgtt 9329201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 68 - 259
Target Start/End: Original strand, 10353553 - 10353744
Alignment:
Q  68 agagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgcgcgatcaatgttttcagactcaagaatgtta 167  Q
    ||||||||||||||||||||||||||||| ||  | |||| |||||||||| ||||||||||  |   | || | |  ||| ||||| |  |||||||||    
T  10353553 agagattctgaggagtttgtaatcgccggatacagaatcaaaaccgaagccatgaacgcataagcagccacggttagggttgtcagattggagaatgtta 10353652  T
Q  168 gggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaa 259  Q
    ||||||| ||||||||||||||||||||||| ||| ||| | ||||| |||||| | | |||||||||||| ||||||| ||||||||||||    
T  10353653 gggataggaagagggagaaaagggataatccgatgcttacgggtgttggggttccatattgtgatttcgttgggggcgttaggatgcgtgaa 10353744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 59 - 238
Target Start/End: Original strand, 9321399 - 9321578
Alignment:
Q  59 ggctatccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgc-gcgatcaatgttttcagactc 157  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||| || |||||||||| | | || |||||  ||||| || || ||    
T  9321399 ggctaaccaagagattctgaggagtttgtaatcgccggttaaaggatcaaaaccgaaaccatgaacgcata-agcagcagcgattgatgttgtcggattc 9321497  T
Q  158 aagaatgttagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgtt 238  Q
     | ||||| |||||||| |||||| || |||||||| || | ||| ||| ||||| |||||||| ||| ||||||||||||    
T  9321498 cataatgtcagggataggaagaggtaggaaagggatcatacgatgcttacgagtgctagggttccagattgtgatttcgtt 9321578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 65 - 236
Target Start/End: Complemental strand, 9060836 - 9060665
Alignment:
Q  65 ccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgcgcgatcaatgttttcagactcaagaatg 164  Q
    ||||| |||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| |||  ||||||    ||| ||||| ||   ||||    
T  9060836 ccaagtgattctgaggagtttgtaatcggcggtgaatggatcaaaaccgaagccgtgaacgcatataccgccgcgattggggttgtcagagtcctcaatg 9060737  T
Q  165 ttagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcg 236  Q
    |||||||||| |||||||| |||||||||  ||| || |||  | |||||||||||| ||| |||| |||||    
T  9060736 ttagggataggaagagggataaaagggatggtccgatctttgcgggtgttagggttccagattgtggtttcg 9060665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 129
Target Start/End: Original strand, 10336273 - 10336337
Alignment:
Q  65 ccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcata 129  Q
    |||||||||||||||||||||||||||| ||| ||||| |||| ||||||| |||||||||||||    
T  10336273 ccaagagattctgaggagtttgtaatcggcggataatgaatcaaaaccgaatccgtgaacgcata 10336337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 123
Target Start/End: Complemental strand, 8573200 - 8573142
Alignment:
Q  65 ccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaa 123  Q
    ||||||||||| |||||||||||||||| |||||||| ||||| |||||||||||||||    
T  8573200 ccaagagattcggaggagtttgtaatcggcggttaatagatcaaaaccgaagccgtgaa 8573142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 297
Target Start/End: Original strand, 9275044 - 9275182
Alignment:
Q  159 agaatgttagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtga 258  Q
    ||||||||||| |||| ||||||||||||||||||||||| |||||||   |||||||||||| ||| ||| ||||| || |   ||| ||||||| |||    
T  9275044 agaatgttaggtataggaagagggagaaaagggataatccgatgtttaccggtgttagggttccagattgtaatttcatttgcatcgtcaggatgcctga 9275143  T
Q  259 agcagatttggctattggaaatggcgaggaggccgttac 297  Q
    ||  | |||||| |||||| || || | |||||||||||    
T  9275144 aggcggtttggccattggagatagcaatgaggccgttac 9275182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 166 - 235
Target Start/End: Original strand, 10372391 - 10372460
Alignment:
Q  166 tagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttc 235  Q
    |||| |||| |||||||||||||||||||| |||||||||| | |||||||||||| ||| |||||||||    
T  10372391 taggaataggaagagggagaaaagggataaccctatgtttacgggtgttagggttccagaatgtgatttc 10372460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 129
Target Start/End: Original strand, 10372301 - 10372363
Alignment:
Q  67 aagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcata 129  Q
    ||||||||||||||||||||| |||||||| ||| | |||| |||||||||| ||||||||||    
T  10372301 aagagattctgaggagtttgtgatcgccggataaagaatcaaaaccgaagccatgaacgcata 10372363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 134
Target Start/End: Complemental strand, 7115340 - 7115271
Alignment:
Q  65 ccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacct 134  Q
    ||||||||||||||| |||||||||||  | ||||| |||||| ||||||||||||||| ||||| ||||    
T  7115340 ccaagagattctgagaagtttgtaatcatctgttaaaggatcaaaaccgaagccgtgaaagcatagacct 7115271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 124
Target Start/End: Original strand, 9274915 - 9275000
Alignment:
Q  39 tcaaaagagtaatgtaggtcggctatccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaac 124  Q
    ||||||||||||||||  || |||| ||| ||||||||||| ||||| |||||||||| ||| |||||| |||| || ||||||||    
T  9274915 tcaaaagagtaatgtatatcagctaaccatgagattctgagaagtttataatcgccggataaaggatcaaaaccaaaaccgtgaac 9275000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 129
Target Start/End: Original strand, 10348227 - 10348284
Alignment:
Q  72 attctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcata 129  Q
    |||||||||||||||||||| |||| || | ||||| |||||||||||||||||||||    
T  10348227 attctgaggagtttgtaatcaccggatatttgatcaaaaccgaagccgtgaacgcata 10348284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 259
Target Start/End: Original strand, 10348312 - 10348405
Alignment:
Q  166 tagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaa 259  Q
    |||| |||| |||||||||||||||||||||   ||||||| | |||||||||||| ||| ||||||||||||  ||  || ||||||||||||    
T  10348312 taggaataggaagagggagaaaagggataatgtgatgtttacgggtgttagggttccagattgtgatttcgttgaggttgttaggatgcgtgaa 10348405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 65 - 297
Target Start/End: Original strand, 37462927 - 37463159
Alignment:
Q  65 ccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgcgcgatcaatgttttcagactcaagaatg 164  Q
    |||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||  |   |||| | |  ||| |  || || | ||||    
T  37462927 ccaagagattctgaggagtttgtaatcgccggttaaagaatcaaaaccgaagccgtgaacgcataagcagccgcggttagggttgtttgattccataatg 37463026  T
Q  165 ttagggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaagcaga 264  Q
    | ||||| ||  | |||||||||||||||||||  ||||||| | |||||||||||| ||| |||||||||||| | ||||| ||||||||||||   ||    
T  37463027 taagggacaggcatagggagaaaagggataatcagatgtttacgtgtgttagggttccagattgtgatttcgttggcggcgttaggatgcgtgaaagcga 37463126  T
Q  265 tttggctattggaaatggcgaggaggccgttac 297  Q
    |||||| |||||| || ||||||||||||||||    
T  37463127 tttggccattggagatagcgaggaggccgttac 37463159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 67 - 259
Target Start/End: Original strand, 26575304 - 26575496
Alignment:
Q  67 aagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcatacacctgcgcgatcaatgttttcagactcaagaatgtt 166  Q
    |||||||||||||||||||||||||||||| ||| | |||| |||||||||||||||||||||  |   | |||| |  ||| ||||| |  ||||||||    
T  26575304 aagagattctgaggagtttgtaatcgccggataaagaatcaaaaccgaagccgtgaacgcataagcagccacgattagggttgtcagattggagaatgtt 26575403  T
Q  167 agggatagcaagagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtgaa 259  Q
    |||||| | ||||||||||||||||||||||| || ||||   |||| ||||||| ||| || ||||||||| |||||||  |||||||||||    
T  26575404 agggatgggaagagggagaaaagggataatccgatatttaccggtgtaagggttccagattgcgatttcgttgggggcgttgggatgcgtgaa 26575496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 65 - 129
Target Start/End: Original strand, 4912 - 4976
Alignment:
Q  65 ccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgcata 129  Q
    |||||||| |||||||| |||||||||||||||||| |||||| |||||||||||||||||||||    
T  4912 ccaagagagtctgaggattttgtaatcgccggttaaaggatcaaaaccgaagccgtgaacgcata 4976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 297
Target Start/End: Original strand, 5018 - 5138
Alignment:
Q  177 agagggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttcgttaggggcgtaaggatgcgtga-agcagatttggctattg 275  Q
    ||||||||||||||||||||   ||||||| |  ||||||||||| ||| |||||||||||| | ||||| ||||||  ||| ||| ||||| ||  |||    
T  5018 agagggagaaaagggataatgtgatgtttacggatgttagggttccagattgtgatttcgttggcggcgttaggatgtctgagagc-gatttcgccgttg 5116  T
Q  276 gaaatggcgaggaggccgttac 297  Q
    |||| |||||||||||||||||    
T  5117 gaaacggcgaggaggccgttac 5138  T

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Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 65 - 127
Target Start/End: Complemental strand, 41966424 - 41966362
Alignment:
Q  65 ccaagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgca 127  Q
    ||||||||||||||||||||||| ||||| ||||||||||||| ||||||| |||||||||||    
T  41966424 ccaagagattctgaggagtttgtgatcgctggttaatggatcaaaaccgaatccgtgaacgca 41966362  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 235
Target Start/End: Complemental strand, 41966310 - 41966254
Alignment:
Q  179 agggagaaaagggataatcctatgtttatgagtgttagggttcaagactgtgatttc 235  Q
    |||||||||||||||||||| |||||||    ||||||||||| ||| |||||||||    
T  41966310 agggagaaaagggataatccgatgtttacagatgttagggttccagaatgtgatttc 41966254  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 66 - 127
Target Start/End: Complemental strand, 29467489 - 29467429
Alignment:
Q  66 caagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgca 127  Q
    |||||||||||||| |||||||||||  |||||||||||||| |||||||||||||||||||    
T  29467489 caagagattctgag-agtttgtaatcatcggttaatggatcaaaaccgaagccgtgaacgca 29467429  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 29453013 - 29452955
Alignment:
Q  66 caagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaac 124  Q
    ||||||||||||||||||||||||||| || |||| |||||| |||| |||||||||||    
T  29453013 caagagattctgaggagtttgtaatcgacgtttaacggatcaaaaccaaagccgtgaac 29452955  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 29443027 - 29442970
Alignment:
Q  66 caagagattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaa 123  Q
    ||||||||||||| |||||||||||||  ||| ||||||||| |||||||||||||||    
T  29443027 caagagattctgatgagtttgtaatcgttggtcaatggatcaaaaccgaagccgtgaa 29442970  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 127
Target Start/End: Original strand, 29423702 - 29423759
Alignment:
Q  70 agattctgaggagtttgtaatcgccggttaatggatcataaccgaagccgtgaacgca 127  Q
    ||||| ||||||||||||||||  | |||||||||||| |||||||||||| ||||||    
T  29423702 agattgtgaggagtttgtaatcatcagttaatggatcaaaaccgaagccgtaaacgca 29423759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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