View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8518A_low_142 (Length: 294)

Name: NF8518A_low_142
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8518A_low_142
NF8518A_low_142
[»] chr1 (4 HSPs)
chr1 (24-287)||(29467152-29467415)
chr1 (22-255)||(29452676-29452909)
chr1 (25-232)||(29423828-29424035)
chr1 (22-239)||(29442684-29442901)
[»] chr2 (10 HSPs)
chr2 (23-256)||(14550910-14551143)
chr2 (154-256)||(12005616-12005718)
chr2 (155-256)||(12018381-12018482)
chr2 (154-250)||(11986979-11987075)
chr2 (157-252)||(12012047-12012142)
chr2 (23-78)||(8572827-8572882)
chr2 (198-232)||(8579035-8579069)
chr2 (199-253)||(9365188-9365242)
chr2 (198-252)||(10336378-10336432)
chr2 (23-75)||(9292699-9292751)
[»] chr4 (1 HSPs)
chr4 (202-242)||(55718336-55718376)


Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 24 - 287
Target Start/End: Original strand, 29467152 - 29467415
Alignment:
Q  24 aaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcct 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29467152 aaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcct 29467251  T
Q  124 ttcaaaatccccaacaacttcatctctctgttcggttcatgtaacggccttctctgcatttccaccaatgtcggaatcgctttctggaatcctaacatcc 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29467252 ttcaaaatccccaacaacttcatctctctgttcggttcatgtaacggccttctctgcatttccatcaatgtcggaatcgctttctggaatcctaacatcc 29467351  T
Q  224 gtaaacatcagattattcctaatctccctattcaaactcctgctctttctaaacctaacaccat 287  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29467352 gtaaacatcggattattcctaatctccctattcaaactcctgctctttctaaacctaacaccat 29467415  T

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Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 22 - 255
Target Start/End: Original strand, 29452676 - 29452909
Alignment:
Q  22 caaaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttc 121  Q
    ||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29452676 caaaattccctcaatcgttccttaatccttcgacacaactctgttttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttc 29452775  T
Q  122 ctttcaaaatccccaacaacttcatctctctgttcggttcatgtaacggccttctctgcatttccaccaatgtcggaatcgctttctggaatcctaacat 221  Q
    |||||||| |||||||||||  ||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||    
T  29452776 ctttcaaactccccaacaacaacatctctctgttcagttcatgtaacggccttctcttcattaccaccaatgtcggaatcgctttctggaaccctaacat 29452875  T
Q  222 ccgtaaacatcagattattcctaatctccctatt 255  Q
    |||||||||||||| |||||||||||||||||||    
T  29452876 ccgtaaacatcagaatattcctaatctccctatt 29452909  T

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Target: chr1; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 25 - 232
Target Start/End: Complemental strand, 29424035 - 29423828
Alignment:
Q  25 aattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcctt 124  Q
    |||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||  | |||||||||||| |||||    
T  29424035 aattccttcaatcgttccttaatccttcgacacaactctgatttctaccaaatcaacgatttctctaacctaactaccgccgttaaactcaatcctcctt 29423936  T
Q  125 tcaaaatccccaacaacttcatctctctgttcggttcatgtaacggccttctctgcatttccaccaatgtcggaatcgctttctggaatcctaacatccg 224  Q
    |||||  | |||||||||||||||||||| |||| ||||||||||||||||||||| | | | || |||  | ||||||||||||||| |||| |||| |    
T  29423935 tcaaaggctccaacaacttcatctctctggtcggatcatgtaacggccttctctgcctcttctccgatggtgaaatcgctttctggaaccctaccatctg 29423836  T
Q  225 taaacatc 232  Q
    ||||||||    
T  29423835 taaacatc 29423828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 22 - 239
Target Start/End: Original strand, 29442684 - 29442901
Alignment:
Q  22 caaaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttc 121  Q
    ||||||| ||||||||||| ||||||||||||||||||||  ||||||||||||||| | ||||||||||||||||||||| || ||||||||||  |||    
T  29442684 caaaatttcctcaatcgttccttaatccttcgacacaactttgatttctaccaaatcgaagatttctctaacctaaccaccggcgttaaactcaacattc 29442783  T
Q  122 ctttcaaaatccccaacaacttcatctctctgttcggttcatgtaacggccttctctgcatttccaccaatgtcggaatcgctttctggaatcctaacat 221  Q
    |||||| |   |||| ||||  ||| |||||  | |||||||||||||||||||||||||||||| ||||||  ||||||||||||||||| ||||||||    
T  29442784 ctttcacaggtcccatcaaccgcatgtctcttctaggttcatgtaacggccttctctgcatttcctccaatgctggaatcgctttctggaaccctaacat 29442883  T
Q  222 ccgtaaacatcagattat 239  Q
    ||||||||| | ||||||    
T  29442884 ccgtaaacaccggattat 29442901  T

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Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 23 - 256
Target Start/End: Complemental strand, 14551143 - 14550910
Alignment:
Q  23 aaaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcc 122  Q
    |||||||||||||| ||| |||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14551143 aaaattccctcaattgttccttaatccttcgacacaagtccaatctctaccaaatcaacgatttctctaacctaaccacccgcattaaactcaatcttcc 14551044  T
Q  123 tttcaaaatccccaacaacttcatctctctgttcggttcatgtaacggccttctctgcatttccaccaatgtcggaatcgctttctggaatcctaacatc 222  Q
    |||| ||  |  ||||||||||||||||||| |||||||||||||||| ||||||| ||| |   |||||| || ||| ||||| ||||| |||||||||    
T  14551043 tttcgaaggcttcaacaacttcatctctctgctcggttcatgtaacggtcttctctacatcttttccaatggcgaaattgctttatggaaccctaacatc 14550944  T
Q  223 cgtaaacatcagattattcctaatctccctattc 256  Q
    ||||||||||  ||||| ||| ||||||||||||    
T  14550943 cgtaaacatcgcattatccctgatctccctattc 14550910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 154 - 256
Target Start/End: Original strand, 12005616 - 12005718
Alignment:
Q  154 ttcggttcatgtaacggccttctctgcatttccaccaatgtcggaatcgctttctggaatcctaacatccgtaaacatcagattattcctaatctcccta 253  Q
    |||||||||||||||||||| |||||||||||| |||| | || |||| |||||||||| ||||||||||||||||||| |||||| |||||||||||||    
T  12005616 ttcggttcatgtaacggcctcctctgcatttcctccaaagccgaaatcactttctggaaccctaacatccgtaaacatcggattatccctaatctcccta 12005715  T
Q  254 ttc 256  Q
    |||    
T  12005716 ttc 12005718  T

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Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 155 - 256
Target Start/End: Original strand, 12018381 - 12018482
Alignment:
Q  155 tcggttcatgtaacggccttctctgcatttccaccaatgtcggaatcgctttctggaatcctaacatccgtaaacatcagattattcctaatctccctat 254  Q
    ||||||||||||||||||| |||||||||||| ||||   || ||||||||||||||| ||| ||||||||||||||| |||||| ||| ||||||||||    
T  12018381 tcggttcatgtaacggcctcctctgcatttcctccaacaacgaaatcgctttctggaacccttacatccgtaaacatcggattatccctcatctccctat 12018480  T
Q  255 tc 256  Q
    ||    
T  12018481 tc 12018482  T

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Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 154 - 250
Target Start/End: Original strand, 11986979 - 11987075
Alignment:
Q  154 ttcggttcatgtaacggccttctctgcatttccaccaatgtcggaatcgctttctggaatcctaacatccgtaaacatcagattattcctaatctcc 250  Q
    |||||||||||||||||||| |||||||||||| ||||   || ||||||||||||||| ||||||| ||||||||||| |||||| ||| ||||||    
T  11986979 ttcggttcatgtaacggcctcctctgcatttcctccaacaacgaaatcgctttctggaaccctaacacccgtaaacatcggattatccctcatctcc 11987075  T

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Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 252
Target Start/End: Original strand, 12012047 - 12012142
Alignment:
Q  157 ggttcatgtaacggccttctctgcatttccaccaatgtcggaatcgctttctggaatcctaacatccgtaaacatcagattattcctaatctccct 252  Q
    |||||||||||||||||  ||||||||||| | ||   || || ||| |||||||| |||||||||||||||||||||||||| ||||||||||||    
T  12012047 ggttcatgtaacggcctcatctgcatttcctcaaacaccgaaaccgcgttctggaaccctaacatccgtaaacatcagattatccctaatctccct 12012142  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 8572827 - 8572882
Alignment:
Q  23 aaaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaaatc 78  Q
    |||||||||||||||||| ||||||| |||||| ||||| |||| |||||||||||    
T  8572827 aaaattccctcaatcgttccttaatcattcgacgcaactacgatatctaccaaatc 8572882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 232
Target Start/End: Original strand, 8579035 - 8579069
Alignment:
Q  198 aatcgctttctggaatcctaacatccgtaaacatc 232  Q
    ||||||||||||||| |||||||||||||||||||    
T  8579035 aatcgctttctggaaccctaacatccgtaaacatc 8579069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 253
Target Start/End: Complemental strand, 9365242 - 9365188
Alignment:
Q  199 atcgctttctggaatcctaacatccgtaaacatcagattattcctaatctcccta 253  Q
    |||||||||||||| ||||||||||||||||||| ||| || ||| |||| ||||    
T  9365242 atcgctttctggaaccctaacatccgtaaacatcggatcatcccttatcttccta 9365188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 252
Target Start/End: Complemental strand, 10336432 - 10336378
Alignment:
Q  198 aatcgctttctggaatcctaacatccgtaaacatcagattattcctaatctccct 252  Q
    |||||| ||||| ||||||| |||||||||||||| |||||| ||| ||||||||    
T  10336432 aatcgcattctgtaatcctaccatccgtaaacatcggattatcccttatctccct 10336378  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 9292751 - 9292699
Alignment:
Q  23 aaaattccctcaatcgtttcttaatccttcgacacaactccgatttctaccaa 75  Q
    ||||||||||||| || | |||||||||||||||||| | |||| ||||||||    
T  9292751 aaaattccctcaaccgatccttaatccttcgacacaaattcgatctctaccaa 9292699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 242
Target Start/End: Complemental strand, 55718376 - 55718336
Alignment:
Q  202 gctttctggaatcctaacatccgtaaacatcagattattcc 242  Q
    ||||||||||||||||  ||||||||||||| |||||||||    
T  55718376 gctttctggaatcctacgatccgtaaacatcggattattcc 55718336  T

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