View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8518A_low_145 (Length: 292)

Name: NF8518A_low_145
Description: NF8518A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8518A_low_145
NF8518A_low_145
[»] chr1 (1 HSPs)
chr1 (1-292)||(2448984-2449275)


Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 2448984 - 2449275
Alignment:
Q  1 gacacttgatttaagaaaatgataattaaagaatgaaggttaaatacataccactttgtattatagtgtcatgaatattaactcgaattgagtttgagat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2448984 gacacttgatttaagaaaatgataattaaagaatgaaggttaaatacataccactttgtattatagagtcatgaatattaactcgaattgagtttgagat 2449083  T
Q  101 atcaattccatcagtgttgtaactatcttttggcgaacttatgttaatatgcgagattgttacatcttgactatggactacatagacatgcattgctggt 200  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  2449084 atcaattccatcggtgttgtaactatcttttgacgaacttatgttaatatgcgagattgttacatcttgactatggactacatagacatgcattgctggc 2449183  T
Q  201 ccatttatatgagtcagtccacttaattgaagtccatcacatctttcaaatagtaaagcctgcacattcaacaatatgcataatttattttt 292  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2449184 ccatttatatgagttagtccacttaattgaagtccatcacatctttcaaatagtaaagcctgcacattcaacaatatgcataatttattttt 2449275  T

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